View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6940_low_4 (Length: 574)
Name: NF6940_low_4
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6940_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 349
Target Start/End: Original strand, 9820183 - 9820513
Alignment:
| Q |
14 |
acaatatcaaatgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcatcaagcattccctaatatatc |
113 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9820183 |
acaataccaaatgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcagcaagcattccctaatatatc |
9820282 |
T |
|
| Q |
114 |
tctccattgttctgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgaggtccatcagtcac |
213 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9820283 |
tctccattgtt-----ccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgagggccatcagtcac |
9820377 |
T |
|
| Q |
214 |
tggaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagtaatgacagtatgggtt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9820378 |
tggaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccaaaaagatcaacttaactcacagtaaagtaatgacagtatgggtt |
9820477 |
T |
|
| Q |
314 |
caaaatgtatgtttcactaacaaatataaacttacc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
9820478 |
caaaatgtatgtttcactaacaaatataaacttacc |
9820513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 353 - 564
Target Start/End: Original strand, 9821130 - 9821341
Alignment:
| Q |
353 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
452 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821130 |
atcatatggagcactgcttgacgtaaatacgaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
9821229 |
T |
|
| Q |
453 |
aagtcaactagtaaagtaaaatactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
552 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821230 |
aagtcaactagtaaagtaaactactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
9821329 |
T |
|
| Q |
553 |
atttcgttcatc |
564 |
Q |
| |
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|||||||||||| |
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| T |
9821330 |
atttcgttcatc |
9821341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 198 - 349
Target Start/End: Original strand, 38873994 - 38874145
Alignment:
| Q |
198 |
gaggtccatcagtcactggaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagt |
297 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| | |||| |
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| T |
38873994 |
gagggccatcagtcactggaaaagtaaagataaaatgcaacaatgatctcagaatcatacgtatttctaccacaaagatcaactcaactcacaatgaagt |
38874093 |
T |
|
| Q |
298 |
aatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
349 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
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|
| T |
38874094 |
aatgacagtataagttcaagatgtatgtttcactaagaaatataaacttacc |
38874145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 38873737 - 38873924
Alignment:
| Q |
1 |
atcatccttgtaaacaatatcaaatgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcatcaagcat |
100 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||||| | || |||||||||||||||||| ||||||| |
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| T |
38873737 |
atcatccatgtacacaataccaaatgaagaaataggaaaatatacaaagttcagatttcag-------gcacgcattaactttctgtctgcagcaagcat |
38873829 |
T |
|
| Q |
101 |
tccctaatatatctctccattgttctgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgag |
200 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
38873830 |
tccctaatatatctctctattgttc-----cttccacattaattagagccaacagcaaagatgcacttaggaatctgtcacatgctcgcgagaaaatgag |
38873924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 353 - 455
Target Start/End: Original strand, 38875382 - 38875481
Alignment:
| Q |
353 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
452 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38875382 |
atcatatggagcactacttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataag |
38875478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 474 - 564
Target Start/End: Original strand, 38875620 - 38875710
Alignment:
| Q |
474 |
tactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagcaatttcgttcatc |
564 |
Q |
| |
|
||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||| |||| |||||||| | ||| |||||||||| |
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|
| T |
38875620 |
tactaaaaatcgatgtcaacaatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttgtatcaaattcgttcatc |
38875710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 38694447 - 38694279
Alignment:
| Q |
24 |
atgaagaaataggaaaatatacagagttcagatttcagatttcaggtgcgtattaactttctgtctgcatcaagcattccctaatatatctctccattgt |
123 |
Q |
| |
|
||||||||||||||||||||| | || | ||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||| | | |
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| T |
38694447 |
atgaagaaataggaaaatatata-----cacagttcagatttcaagcgcgtattaactttctgtctgcagcaagcattccctaatatctctctc---tct |
38694356 |
T |
|
| Q |
124 |
tctgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgag |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
38694355 |
attgttccttccgcattaattagagccaacagcaaagatgcacttaggaatctgtcacatgctcgcgagaaaatgag |
38694279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 353 - 471
Target Start/End: Complemental strand, 38693718 - 38693599
Alignment:
| Q |
353 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
452 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| || |||| ||||||||||||||||| |
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|
| T |
38693718 |
atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag |
38693619 |
T |
|
| Q |
453 |
aa-gtcaactagtaaagtaa |
471 |
Q |
| |
|
|| | |||||||||||||| |
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|
| T |
38693618 |
aaggaaaactagtaaagtaa |
38693599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 38694203 - 38694151
Alignment:
| Q |
203 |
ccatcagtcactggaaaagcaaa-gataaaatgcaacaatgatcttagaatca |
254 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
38694203 |
ccatcagtcactggaaaggaaaacgataaaatgcaacaatgatcttagaatca |
38694151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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