View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6940_low_47 (Length: 217)

Name: NF6940_low_47
Description: NF6940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6940_low_47
NF6940_low_47
[»] chr6 (2 HSPs)
chr6 (10-209)||(7519468-7519667)
chr6 (10-203)||(7528839-7529032)
[»] chr4 (1 HSPs)
chr4 (10-203)||(4231810-4232003)
[»] chr1 (12 HSPs)
chr1 (10-203)||(43066424-43066617)
chr1 (10-203)||(3301073-3301266)
chr1 (10-203)||(43045337-43045530)
chr1 (10-203)||(43045790-43045983)
chr1 (10-203)||(43084218-43084411)
chr1 (12-203)||(45983463-45983654)
chr1 (10-203)||(45993241-45993434)
chr1 (10-184)||(7890793-7890967)
chr1 (29-203)||(38137628-38137802)
chr1 (10-175)||(40034449-40034612)
chr1 (28-177)||(7888546-7888695)
chr1 (10-177)||(51291985-51292151)
[»] chr5 (1 HSPs)
chr5 (29-203)||(16349482-16349656)
[»] chr2 (4 HSPs)
chr2 (10-203)||(34691170-34691361)
chr2 (10-203)||(34713582-34713773)
chr2 (26-153)||(16232567-16232694)
chr2 (41-78)||(33861304-33861341)
[»] chr8 (3 HSPs)
chr8 (26-203)||(4620033-4620210)
chr8 (26-177)||(1846761-1846912)
chr8 (26-153)||(4787275-4787402)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 7519468 - 7519667
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7519468 tgagatgaacaagaggtctttcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgctttgtggaaattt 7519567  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtgatgtcc 209  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7519568 gagaccaccaagtactactgcacagtcattgatgctcccggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtgctgtcc 7519667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 7528839 - 7529032
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  7528839 tgagatgaacaagcgttcattcaagtatgcatgggttcttgacaaacttaaggctgagcgtgaaagaggaattaccatcgatattgccttgtggaaattt 7528938  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7528939 gagaccaccaagtactactgcacagtcattgatgctcccggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 7529032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 4232003 - 4231810
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||||||| | ||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||  ||||||| |||    
T  4232003 tgagatgaacaagcgttcatttaagtatgcttgggttcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacattgctctgtggaagttt 4231904  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||  | |||||||| ||||||||||||||||| || ||||| ||||||||||    
T  4231903 gagaccactaagtactactgcactgtcattgatgcccctggacacagggatttcattaagaacatgattactggtacatcccaagctgattgtg 4231810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 43066424 - 43066617
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||||||| | ||||||||||| || ||||||||||||||||| |||||||| ||||||||||| || |||||||| |||||  | ||||| |||    
T  43066424 tgagatgaacaagcgttcattcaagtatgcctgggttcttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagttt 43066523  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||||| ||||||||||||||||| ||||| ||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||||||||    
T  43066524 gagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctgattgtg 43066617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 3301266 - 3301073
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||||||| | ||||||||||| || ||||| || |||||||| ||||||||  |||||||||| || || ||||| |||||  ||||||| |||    
T  3301266 tgagatgaacaagcgttcattcaagtatgcttgggtgctcgacaagctcaaggctgaatgtgaaagaggtatcacaattgacattgctctgtggaagttt 3301167  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||||| || |||||||||||||| ||||||||||| || |||||  | |||||||| |||||||||||||||||||| ||||| ||||||||||    
T  3301166 gagactactaagtactactgcactgtcattgatgcccccggacacagggatttcattaagaacatgattactggaacatcccaagctgattgtg 3301073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 43045530 - 43045337
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||  | ||||| |||    
T  43045530 tgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagttt 43045431  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||||| ||||||||||||||||| ||||| ||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||||||||    
T  43045430 gagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctgattgtg 43045337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 43045983 - 43045790
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||  | ||||| |||    
T  43045983 tgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagttt 43045884  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||||| ||||||||||||||||| ||||| ||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||||||||    
T  43045883 gagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctgattgtg 43045790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 43084411 - 43084218
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||  | ||||| |||    
T  43084411 tgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagttt 43084312  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||||| ||||||||||||||||| ||||| ||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||||||||    
T  43084311 gagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctgattgtg 43084218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 45983463 - 45983654
Alignment:
Q  12 agatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttga 111  Q
    ||||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| |||||||||||  |||| ||||| ||| |  ||| ||| |||||    
T  45983463 agatgaacaagcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgaacgtgaaagaggtgttacaattgacattaccctgtcgaagtttga 45983562  T
Q  112 gaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||| | ||||||| ||||||| ||||||||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||| ||||    
T  45983563 gacaaacaagtacaactgcactgtcattgatgcccccggacacagggatttcattaagaacatgatcaccggaacgtcccaagctgactgtg 45983654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 45993241 - 45993434
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    |||||||| |||| | ||||||||||| || ||||| ||||||||||| ||| |||||||||||||||| || || ||||| | | | |||| ||| |||    
T  45993241 tgagatgatcaagcgttcattcaagtatgcttgggtgcttgacaagctcaagactgagcgtgaaagaggtatcacaattgacagttctttgtcgaagttt 45993340  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||||| | |||||||  |||||| |||||||||||  | |||||  | |||||||| ||||||||||| || || || ||||| ||||||||||    
T  45993341 gagacaaacaagtacagctgcactgtcattgatgcctccggacacagggatttcattaagaacatgatcaccgggacgtcccaagctgattgtg 45993434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 7890793 - 7890967
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||||| |   ||||||||||| || ||||| ||||||||||| ||||| |||||||||||||| || || ||||| ||| |  ||||||| |||    
T  7890793 tgagatgaacaggcattcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctgtggaagttt 7890892  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactgga 184  Q
    ||||| ||||| | |  ||||||  |||||||||| ||||||||  | |||||||| ||||||||||| ||||||    
T  7890893 gagacaaccaacttccgctgcactctcattgatgcccctggacacagggatttcattaagaacatgatcactgga 7890967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 38137628 - 38137802
Alignment:
Q  29 ttcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttgagaccaccaagtactact 128  Q
    |||||||| || ||||| || |||||||| ||||| |||||||||||||| || || ||||| ||| |  |||  || |||||||| |||||||||||||    
T  38137628 ttcaagtatgcttgggtgctcgacaagctcaaggccgagcgtgaaagaggtatcactattgacatttctctgtcaaagtttgagactaccaagtactact 38137727  T
Q  129 gcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||||  |||||||||| || |||||  | |||||||| |||||||||||||| || || ||||| ||||| ||||    
T  38137728 gcactctcattgatgcccccggacacagggatttcattaagaacatgattaccgggacgtcccaagctgactgtg 38137802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 40034449 - 40034612
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||||||| | ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||  |||| ||||||||| |  |||  || |||    
T  40034449 tgagatgaacaagcgctcattcaagtatgcttgggtacttgacaagctcaaggctgagcgtgaaagaggtgttacaattgatatttccatgtccaagttt 40034548  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatg 175  Q
    ||||| ||||| ||| |||||||  ||||||| || || |||||    ||||||||||||||||||    
T  40034549 gagacaaccaaataccactgcactctcattgacgcccccggaca--cagatttcatcaagaacatg 40034612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 7888546 - 7888695
Alignment:
Q  28 attcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttgagaccaccaagtactac 127  Q
    ||||||||| || ||||| |||||||| || |||||||||||||||||||| || || ||||| ||| |  | ||||| ||| |||| ||||  |||| |    
T  7888546 attcaagtatgcttgggtgcttgacaaactcaaggctgagcgtgaaagaggtatcacaattgacatttctctttggaagtttcagacaaccagctactgc 7888645  T
Q  128 tgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgat 177  Q
    |||||  |||||||||| || |||||  | ||||||||||||||||||||    
T  7888646 tgcactctcattgatgcccccggacacagggatttcatcaagaacatgat 7888695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 51292151 - 51291985
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||||| | | ||||||| ||| || ||||| ||||||||| | |||||||||||||||||||| || || ||||| ||| |  | |  || |||    
T  51292151 tgagatgaacatgcgttcattcacgtatgcttgggtgcttgacaagttcaaggctgagcgtgaaagaggtatcacaattgacatttctctatccaagttt 51292052  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgat 177  Q
    || || | ||||||||| |||||  |||||||||| || |||||| |  ||||||| |||||||||||    
T  51292051 ga-acaatcaagtactattgcactctcattgatgcccccggacatgggaatttcattaagaacatgat 51291985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 16349656 - 16349482
Alignment:
Q  29 ttcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttgagaccaccaagtactact 128  Q
    |||||||| || |||||||||||||| || ||||||||||| |||||||| || || ||||| | | |  ||| ||| |||||||| |||||||||  ||    
T  16349656 ttcaagtatgcgtgggttcttgacaaactcaaggctgagcgcgaaagaggtatcacaattgacaattctatgttgaattttgagacaaccaagtaccgct 16349557  T
Q  129 gcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||||  |||||||||| || |||||  | |||||||| ||||||||||||||||| || ||||| ||||||||||    
T  16349556 gcactatcattgatgcccccggacacagggatttcattaagaacatgattactgggacatcccaagctgattgtg 16349482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 34691361 - 34691170
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||| ||| | ||||||||||| || ||||| ||||||||||| || ||||||||||||||||| || || ||||| ||| |  | || || |||    
T  34691361 tgagatgaagaagcgttcattcaagtatgcttgggtgcttgacaagctcaacgctgagcgtgaaagaggtatcacaattgacatttc--tatgcaagttt 34691264  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||||| |||||||||| || |||  ||||||||||||| |||||  | |||||||| ||||||||||| || || |||||||| ||||| ||||    
T  34691263 gagacaaccaagtactgcttcactctcattgatgctcccggacacagggatttcattaagaacatgatcaccgggacctcccaagctgactgtg 34691170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 34713773 - 34713582
Alignment:
Q  10 tgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaattt 109  Q
    ||||||||| ||| | ||||||||||| || ||||| ||||||||||| || ||||||||||||||||| || || ||||| ||| |  | || || |||    
T  34713773 tgagatgaagaagcgttcattcaagtatgcttgggtgcttgacaagctcaacgctgagcgtgaaagaggtatcacaattgacatttc--tatgcaagttt 34713676  T
Q  110 gagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    ||||| |||||||||| || |||  ||||||||||||| |||||  | |||||||| ||||||||||| || || |||||||| ||||| ||||    
T  34713675 gagacaaccaagtactgcttcactctcattgatgctcccggacacagggatttcattaagaacatgatcaccgggacctcccaagctgactgtg 34713582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 16232694 - 16232567
Alignment:
Q  26 tcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttgagaccaccaagtact 125  Q
    ||||||||||| || ||||| ||||||||||| |||||||||||||||||||| || || ||||| ||| |  |||| || |||||||| ||||||||||    
T  16232694 tcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaagtact 16232595  T
Q  126 actgcacagtcattgatgctcctggaca 153  Q
      |||||  |||||||||| || |||||    
T  16232594 gttgcaccctcattgatgcccccggaca 16232567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 33861341 - 33861304
Alignment:
Q  41 tgggttcttgacaagcttaaggctgagcgtgaaagagg 78  Q
    |||||||||||||||||  |||||||||||||||||||    
T  33861341 tgggttcttgacaagctcgaggctgagcgtgaaagagg 33861304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 4620210 - 4620033
Alignment:
Q  26 tcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttgagaccaccaagtact 125  Q
    |||||||| || || ||||| ||||||||||| |||||||||||||||||||| || || || || ||| |  |||  || |||||||| ||||||||||    
T  4620210 tcattcaaatatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaatcgacatttctctgtccaagtttgagacaaccaagtact 4620111  T
Q  126 actgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 203  Q
    |||||||  |||||||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||| ||||    
T  4620110 actgcactctcattgatgcccccggacacagagatttcattaagaacatgatcaccggaacatcccaagctgactgtg 4620033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 1846912 - 1846761
Alignment:
Q  26 tcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttgagaccaccaagtact 125  Q
    ||||||||||| || ||||| ||||||||||| ||||| |||||||||||||| || || ||||| ||| |  | ||||| |||||||| ||||| | |     
T  1846912 tcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaagtttgagacaaccaacttcc 1846813  T
Q  126 actgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgat 177  Q
     ||||||  |||||||||| || |||||  | |||||||| |||||||||||    
T  1846812 tctgcactctcattgatgcccccggacacagggatttcattaagaacatgat 1846761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 4787275 - 4787402
Alignment:
Q  26 tcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttgagaccaccaagtact 125  Q
    ||||||||||| || ||||| |||||||| || |||| |||||||||||||||    || ||||| ||| |  |||  || |||||||| | |||||||     
T  4787275 tcattcaagtatgcttgggtgcttgacaaactcaagggtgagcgtgaaagaggtgccacaattgacatttctatgtccaagtttgagacaaacaagtaca 4787374  T
Q  126 actgcacagtcattgatgctcctggaca 153  Q
    ||||||| |||||||||||||| |||||    
T  4787375 actgcactgtcattgatgctcccggaca 4787402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University