View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6941_high_4 (Length: 249)
Name: NF6941_high_4
Description: NF6941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6941_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 30399813 - 30399583
Alignment:
| Q |
19 |
tttctttggtgtaacgtaacgtgtttctgaaatttacattaaataaatttgaagtgtagatttattttgggtattcacagttttagtgcaagttaatcta |
118 |
Q |
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| T |
30399813 |
tttctttggtgtaatgtaacgtgtttctgaaatttacattaaataaatttgaagtgtagatttattttgggtattcacagttttagtgcaagttaattta |
30399714 |
T |
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| Q |
119 |
gacaaaaataaaatataaaatagtatttgatatcttcgtattaaagataaactcattataagataagattatggcttaaatatgtaaatagttataaatg |
218 |
Q |
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| T |
30399713 |
gacaaaaataaaatataaaatagtatttgatatcttcgtattaaagataaactcattataatataagattatggcttaaatatgtaaatcgttataaatg |
30399614 |
T |
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| Q |
219 |
ttttgctttccgtccctgccgtcataataca |
249 |
Q |
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| T |
30399613 |
ttttgctttctgtccttgccgtcatcataca |
30399583 |
T |
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