View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6941_low_1 (Length: 562)
Name: NF6941_low_1
Description: NF6941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6941_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 85 - 556
Target Start/End: Complemental strand, 32833586 - 32833119
Alignment:
| Q |
85 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttcaatgcttaattgcatcttactttatgctgataaacttataa |
184 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833586 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttaaatgcttaattgcatcttactttatgctgataaacttataa |
32833487 |
T |
|
| Q |
185 |
atgagtgggggaaaatattaattcagcataatatatatactttactttatgtttgtaatgttcacttgatgtaagtttccatttgatatattggattatg |
284 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32833486 |
atgagtggggtaaaatattaattcagcataatatatatactttactttatgtttgtaatgttcgcttgatgtaagtttccatttgatatattggattatg |
32833387 |
T |
|
| Q |
285 |
ttatgggatatgaacttgtgcttgaaattttagtgacggttattcttaaatttatgcatatctgtcaggataacaattttaaacattattaagtagtggc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833386 |
ttatgggatatgaacttgtgcttgaaattttagtgacggttattcttaaatttatgcatatctgtcaggataacaattttaaacattattaagtagtggc |
32833287 |
T |
|
| Q |
385 |
ttttatttaaagataattaaaaagtggcttttatgatgtatgatgatgactgatattgaatagtggcctttatccttatgtttgatttgtaagcttgctt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833286 |
ttttatttaaagataattaaaaagtggcttttatgatgtatgatgatgactgatattgaatagtggcctttatccttatgtttgatttgtaagcttgctt |
32833187 |
T |
|
| Q |
485 |
cacaaataagtgtaaccgaagtctaaccgttttagtg-tttgatatatgataactaactgacacttcatttca |
556 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
32833186 |
cacaaataactgtaaccgaagtctaaccgttttagtgttttgat-----ataactaactgacacttcatttca |
32833119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 32840008 - 32839879
Alignment:
| Q |
85 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttcaatgcttaattgcatcttactttatgctgataaacttataa |
184 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
32840008 |
cttttggttgacactatactaactcacacttaatcaagcttgttaatctaattctcttcaatgtttaattgcatcttactttatgctggtaaacttataa |
32839909 |
T |
|
| Q |
185 |
atgagtgggggaaaatattaattcagcata |
214 |
Q |
| |
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|||||||||| ||||||||||||||||||| |
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|
| T |
32839908 |
atgagtggggaaaaatattaattcagcata |
32839879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32833674 - 32833617
Alignment:
| Q |
1 |
tgaattagaagcttgcttcacaagtaactctaactgtaactgacttctaactgttttc |
58 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32833674 |
tgaattggaagcttgcttcacaagtaactctaactgtaactgacttctaactgttttc |
32833617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32840088 - 32840031
Alignment:
| Q |
1 |
tgaattagaagcttgcttcacaagtaactctaactgtaactgacttctaactgttttc |
58 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32840088 |
tgaattggaagcttgcttcacaagtaactctaactgtaactgacttctaactgttttc |
32840031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 32839845 - 32839780
Alignment:
| Q |
221 |
atactttactttatgtttgtaatgttcacttgatgtaagtttccatttgatatattggattatgtt |
286 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| || |||||||||||||| |
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|
| T |
32839845 |
atactttacattatgtttgtaatgttcacttgatttaagtttccatttcatttattggattatgtt |
32839780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 522 - 556
Target Start/End: Complemental strand, 32839591 - 32839557
Alignment:
| Q |
522 |
tttgatatatgataactaactgacacttcatttca |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
32839591 |
tttgatatatgataactaactgacacttcatttca |
32839557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 29605080 - 29605042
Alignment:
| Q |
148 |
cttaattgcatcttactttatgctgataaacttataaat |
186 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
29605080 |
cttaattgcatcttactttgtgctgataaacatataaat |
29605042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 506 - 554
Target Start/End: Original strand, 16834688 - 16834737
Alignment:
| Q |
506 |
tctaaccgttttagtgttt-gatatatgataactaactgacacttcattt |
554 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16834688 |
tctaaccgttttagtgttttgatatatgataactaactgacacttcattt |
16834737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 19947254 - 19947296
Alignment:
| Q |
6 |
tagaagcttgcttcacaagtaactctaactgtaactgacttct |
48 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
19947254 |
tagaaacttgcttcacaagtaactctaactgtaacagacttct |
19947296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 19961148 - 19961187
Alignment:
| Q |
148 |
cttaattgcatcttactttatgctgataaacttataaatg |
187 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
19961148 |
cttaactgcatcttactttgtgctgataaacttataaatg |
19961187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 28405877 - 28405906
Alignment:
| Q |
12 |
cttgcttcacaagtaactctaactgtaact |
41 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
28405877 |
cttgcttcacaagtaactctaactgtaact |
28405906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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