View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6941_low_2 (Length: 356)
Name: NF6941_low_2
Description: NF6941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6941_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 36990674 - 36990405
Alignment:
| Q |
17 |
atgataatgggagcttgtgatctgaatggttgttgaattctgatacagttccaccaatttgagggttattaatggggtttaaaggtaatgaagaaacgag |
116 |
Q |
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| T |
36990674 |
atgataatgggagcttgtgatctgaatggttgttgaattctgatacagttccacaaatttgagggttattaatggggtttaaaggtaatgaagaaacgag |
36990575 |
T |
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| Q |
117 |
atttgagattggttggtgttgcaagtttgatagtactccttcgttggctttgttgttctcttcagctaatgcgtcacagaatgctctgtgggtaatgaag |
216 |
Q |
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| T |
36990574 |
atttgagattggttggtgttgcaagtttgatagtactccttcgttggctttgttgttctcttcagccaatgcgtcacagaatgctctgtgggtaatgaag |
36990475 |
T |
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| Q |
217 |
ctgtctcttctgcatatagtaaataaatcaattaataagaaactctcttagccaggtgaatatgtaagttaaa |
289 |
Q |
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| T |
36990474 |
ctgtctcttctgcatatagtaaataaatcaattaataagaaactctc-tagccaggtga--atgtaagttaaa |
36990405 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 44150142 - 44150204
Alignment:
| Q |
167 |
tgttgttctcttcagctaatgcgtcacagaatgctctgtgggtaatgaagctgtctcttctgc |
229 |
Q |
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| T |
44150142 |
tgttgttttcttcagttaatgcatcacagaatgctctgtgggttataaaactgtctctcctgc |
44150204 |
T |
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