View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6941_low_3 (Length: 351)
Name: NF6941_low_3
Description: NF6941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6941_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 32840082 - 32840397
Alignment:
| Q |
20 |
caattcaaacaagcatacactgaaaagtcactcactatataataatgatcagtatcacaaatcaatcataataacatttcacattttccatattctcttt |
119 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840082 |
caattcaaacaagcatacactgaaacgtcactcactatataataatgatcagtatcacaaatcaatcataataacatttcacattttccatattctcttt |
32840181 |
T |
|
| Q |
120 |
tctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagatcctccatcctcacccaaaaacaaacctccatttgattcgcaaca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32840182 |
tctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagatcctccatcctcacccaaaaacaaacctccatctgattcgcaaca |
32840281 |
T |
|
| Q |
220 |
accacattcatcttctgcaccggaacaatctgcctctggatcaaagaaacctgcctccactacgggacaagatgcctctgcaaccaagcaaactgcctcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32840282 |
accacattcatcttctgcaccggaacaatctgcctccggatcaaagaaacctgcctccagtacgggacaagatgcctctgcaaccaagcaaactgcctcc |
32840381 |
T |
|
| Q |
320 |
tcatcgggaaaacgtg |
335 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
32840382 |
tcatcggcaaaacgtg |
32840397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 32833668 - 32833979
Alignment:
| Q |
20 |
caattcaaacaagcatacactgaaaagtcactcactatataataatgatcagtatcacaaatcaatcataataacatttcacattttccatattctcttt |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833668 |
caattcaaacaagcatacactgaaacgtcactcactatataataatgatcagtatcacaaatcaatcataataacatttcacattttccatattctcttt |
32833767 |
T |
|
| Q |
120 |
tctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagatcctccatcctcacccaaaaacaaacctccatttgattcgcaaca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32833768 |
tctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagatcctccatcctcacccaaaaacaaacctccatctgattcgcaaca |
32833867 |
T |
|
| Q |
220 |
accacattcatcttctgcaccggaacaatctgcctctggatcaaagaaacctgcctccactacgggacaagatgcctctgcaaccaagcaaactgcctcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32833868 |
accacattcatcttctgcaccggaacaatctgccaccggatcaaagaaacctgcctccactacgggacaagatgcctctgcaaccaagcaaactccctcc |
32833967 |
T |
|
| Q |
320 |
tcatcgggaaaa |
331 |
Q |
| |
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|||||||||||| |
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|
| T |
32833968 |
tcatcgggaaaa |
32833979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 29605268 - 29605472
Alignment:
| Q |
20 |
caattcaaacaagcatacactgaaaagtcactcactatataataatgatcagtatcacaaatcaatcataataacatttcacattttccatattctcttt |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29605268 |
caattcaaacaagcatacactgaaacgtcactcactatataataatgatcagtatcacaaatcaatcataataacatttcacattttccatattctcttt |
29605367 |
T |
|
| Q |
120 |
tctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagatcctccatcctcacccaaaaacaaacctccatttgattcgcaaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | ||||||||| ||||||||| ||||||| |||||||| ||||||||| |||||| ||||| |
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| T |
29605368 |
tctcagaaagaaagaaacctctcaacatgactgattaaccaaagaaacctcaagatcttccatccaatcccaaaaatcaacctccatctgattcacaaca |
29605467 |
T |
|
| Q |
220 |
accac |
224 |
Q |
| |
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||||| |
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|
| T |
29605468 |
accac |
29605472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 19946936 - 19946835
Alignment:
| Q |
71 |
gtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctc |
170 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||| |||| |||| || | ||||||||| ||| |||||||||||||| | ||| |||||||| | | |
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| T |
19946936 |
gtatcacaaaataatcacaataacatttcacatttttcata--ctctcttgtgagaaagaaa-aaaactctcaacatgactgattcagcaaagaacaccc |
19946840 |
T |
|
| Q |
171 |
aagat |
175 |
Q |
| |
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||||| |
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|
| T |
19946839 |
aagat |
19946835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 28405835 - 28405748
Alignment:
| Q |
89 |
aataacatttcacattttccatattctcttttctcagaaagaa-agaaacctctcaacatgactcaatcaccaaagaactctcaagat |
175 |
Q |
| |
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||||||| |||||||||| ||| || |||| | |||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |
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| T |
28405835 |
aataacacttcacattttgtatactcaattttgtgagaaagaagagaaacctcttaacatggctcaatcaccaaagaacgatcaagat |
28405748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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