View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6941_low_4 (Length: 312)
Name: NF6941_low_4
Description: NF6941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6941_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 3659355 - 3659634
Alignment:
| Q |
14 |
cacaattatctaaatgccaattaaagtggaacataacaaatccatttatgaatcatatgccaattagacacacagatgagatctaccaattaccaaacaa |
113 |
Q |
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| T |
3659355 |
cacacttatctaaattccaattgaagtggaacataacaaatccatttat-aaccaaatgccaattagacacacagatgagatctaccaattaccaaacaa |
3659453 |
T |
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| Q |
114 |
tctaagtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaa |
213 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3659454 |
tctaagtccaatcaaattgtcctagaatccaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaatgacatttcacgtcaa |
3659553 |
T |
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| Q |
214 |
aattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttg |
294 |
Q |
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| T |
3659554 |
aattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttg |
3659634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 31 - 294
Target Start/End: Original strand, 3653106 - 3653368
Alignment:
| Q |
31 |
caattaaagtggaacataacaaatccatttat-gaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaa |
129 |
Q |
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| T |
3653106 |
caattgaagtggaacataacaaatccatttatagaaccaaatgccaattagacacgcagatgagatctaccagttaccaaacaatctaagtccagtcaaa |
3653205 |
T |
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| Q |
130 |
ttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgccttta |
229 |
Q |
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| T |
3653206 |
ttctcctagaata--atcaaacattacaaatcaaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgccttta |
3653303 |
T |
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| Q |
230 |
ctcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttg |
294 |
Q |
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| T |
3653304 |
ctcttcaaatcagttctgctttccattttaagcggcagtggagcagagaacagaatcttctcttg |
3653368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 298
Target Start/End: Original strand, 3649181 - 3649264
Alignment:
| Q |
215 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttgatgt |
298 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| |||||| |
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| T |
3649181 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgt |
3649264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 298
Target Start/End: Original strand, 3657199 - 3657375
Alignment:
| Q |
118 |
agtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagg---gtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaa |
214 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||| | | ||||||||||| ||| ||||| | | |||||||| || |||| |
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| T |
3657199 |
agtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatg---ataattttatgacatttcgcgacaaa |
3657295 |
T |
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| Q |
215 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttgatgt |
298 |
Q |
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| T |
3657296 |
ttgttcacaccattactcttca----agtcttgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgt |
3657375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 36164576 - 36164634
Alignment:
| Q |
215 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
273 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
36164576 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagcggcaatggagc |
36164634 |
T |
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