View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6942_high_1 (Length: 260)
Name: NF6942_high_1
Description: NF6942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6942_high_1 |
 | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1587916 - 1588155
Alignment:
| Q |
1 |
ttcttgtgtttttctcaccttcaaggacattcatcccaatcagcgttggtgtatgagataagctttgtgatggggggtggtgataaatgtaattcaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
1587916 |
ttcttgtgtttttctcaccttcaaggacattcatcccaatcagcgtcggtgtatgagataagcattgtgatgggaggtggtggtaaatgtaattcaaaat |
1588015 |
T |
|
| Q |
101 |
gtatggtaccctgaacataacgaagaatgcgcttgagagcaagcatgtgttatgtgttcggtgcatgtggaaacaaacttgctgaatcacataagagatg |
200 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1588016 |
gtatgataccttgaacataacggagaatgcgcttgagagcaagcatgtgttatgtgttgggtgcatgtggaaacaaacttgctgaatcgcataagagatg |
1588115 |
T |
|
| Q |
201 |
tcgagtctagtgaaggtgaggtattgtaaggctcttgcaa |
240 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
1588116 |
tcgagtctagtaaaggtgaggtattataaggctcttgcaa |
1588155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 40638 - 40429
Alignment:
| Q |
35 |
cccaatcagcgttggtgtatgagataagctttgtgatggggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataacgaagaatgcgctt |
134 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||| | | ||||||| |
|
|
| T |
40638 |
cccaatcagcgtccgtgtaggagagaagctttgtgatgggggatggtgataaatgtaacccaaagtgtatggtaccctgtacataacggatattgcgctt |
40539 |
T |
|
| Q |
135 |
gagagcaagcatgtgttatgtgttcgg----tgcatgtggaaacaaacttgctgaatcacataagagatgtcgagtctagtgaaggtgaggtattgtaag |
230 |
Q |
| |
|
|||||||| |||||||| |||| | || |||||||| | ||||||||| |||| | |||||||||||||| ||||||||||||||||||| ||| || |
|
|
| T |
40538 |
gagagcaatcatgtgttctgtgctgggtgcatgcatgtgaagacaaacttgttgaaccgcataagagatgtcgggtctagtgaaggtgaggtactgtgag |
40439 |
T |
|
| Q |
231 |
gctcttgcaa |
240 |
Q |
| |
|
|||| ||||| |
|
|
| T |
40438 |
gctcctgcaa |
40429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 45034430 - 45034253
Alignment:
| Q |
67 |
gtgatggggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataacgaagaatgcgcttgagagcaagcatgtgttatgtgttcgg----t |
162 |
Q |
| |
|
|||||||| | |||||||||||||| | ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| ||| | || | |
|
|
| T |
45034430 |
gtgatgggagatggtgataaatgtagtccaaaatgtacggtaccctgaacataacgaagaatgcgttttagagcaagcatgtgttctgtactgggtgcat |
45034331 |
T |
|
| Q |
163 |
gcatgtggaaacaaacttgctgaatcacataagagatgtcgagtctagtgaaggtgaggtattgtaaggctcttgcaa |
240 |
Q |
| |
|
||||||| | |||||||||||||| | |||||||||||| |||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
45034330 |
gcatgtgaagacaaacttgctgaacagcgtaagagatgtcgggtctagtgaatgtgaggtattgtaaagctcctgcaa |
45034253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 24209802 - 24209625
Alignment:
| Q |
67 |
gtgatggggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataacgaagaatgcgcttgagagcaagcatgtgttatgtgttcgg----t |
162 |
Q |
| |
|
|||||||| | |||||||||||||| | ||||||||| ||||||||||||||||||||||||| | || |||||||||||||||| ||| | || | |
|
|
| T |
24209802 |
gtgatgggagatggtgataaatgtagtccaaaatgtacggtaccctgaacataacgaagaatgtgttttagagcaagcatgtgttctgtactgggtgcat |
24209703 |
T |
|
| Q |
163 |
gcatgtggaaacaaacttgctgaatcacataagagatgtcgagtctagtgaaggtgaggtattgtaaggctcttgcaa |
240 |
Q |
| |
|
||||||| | |||||||||||||| | |||||||||||| |||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
24209702 |
gcatgtgaagacaaacttgctgaacagcgtaagagatgtcgggtctagtgaatgtgaggtattgtaaagctcctgcaa |
24209625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 45029579 - 45029402
Alignment:
| Q |
67 |
gtgatggggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataacgaagaatgcgcttgagagcaagcatgtgttatgtgttcgg----t |
162 |
Q |
| |
|
|||||||| | |||||||||||||| | ||||||||| ||||||||||||||||||||||||| | || |||||||||||||||| ||| | || | |
|
|
| T |
45029579 |
gtgatgggagatggtgataaatgtagtccaaaatgtacggtaccctgaacataacgaagaatgagatttagagcaagcatgtgttctgtactaggtgcat |
45029480 |
T |
|
| Q |
163 |
gcatgtggaaacaaacttgctgaatcacataagagatgtcgagtctagtgaaggtgaggtattgtaaggctcttgcaa |
240 |
Q |
| |
|
||||||| | ||||||||||| || | |||||||||||| |||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
45029479 |
gcatgtgaagacaaacttgctaaacagcgtaagagatgtcgggtctagtgaatgtgaggtattgtaaagctcctgcaa |
45029402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 29074487 - 29074630
Alignment:
| Q |
24 |
aggacattcatcccaatcagcgttggtgtatgagataagctttgtgatggggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataacga |
123 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||| | | |||||| ||| |||||||||| | |
|
|
| T |
29074487 |
aggacattcaccccaatcagcgtcagtgtaggagataagctttgtgatggggaatagtgataaatgtaatccgtagtgtatgatactctgaacataatgg |
29074586 |
T |
|
| Q |
124 |
agaatgcgcttgagagcaagcatgtgttatgtgttcggtgcatg |
167 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| || ||||| |
|
|
| T |
29074587 |
agaatgcgcttgagagcaagcatgtgttctgtgttgggagcatg |
29074630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 33165818 - 33165641
Alignment:
| Q |
67 |
gtgatggggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataacgaagaatgcgcttgagagcaagcatgtgttatgtgttcgg----t |
162 |
Q |
| |
|
|||||||| | |||||||||||||| | ||||||||| ||||||||||||||||||||||||| | || |||||||||||||||| ||| | || | |
|
|
| T |
33165818 |
gtgatgggagatggtgataaatgtagtccaaaatgtacggtaccctgaacataacgaagaatgagttttagagcaagcatgtgttctgtactaggtgcat |
33165719 |
T |
|
| Q |
163 |
gcatgtggaaacaaacttgctgaatcacataagagatgtcgagtctagtgaaggtgaggtattgtaaggctcttgcaa |
240 |
Q |
| |
|
||||||| | ||||||||||| || | |||||||||||| |||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
33165718 |
gcatgtgaagacaaacttgctaaacagcgtaagagatgtcgggtctagtgaatgtgaggtattgtaaagctcctgcaa |
33165641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 16594498 - 16594371
Alignment:
| Q |
24 |
aggacattcatcccaatcagcgttggtgtatgagataagctttgtgatggggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataacga |
123 |
Q |
| |
|
||||||| || |||||||||||| ||||| ||||| | |||||| || || | |||||||||||||||| ||||||||| ||| ||||||||||| || |
|
|
| T |
16594498 |
aggacatccaccccaatcagcgtcagtgtaggagatcaactttgtaataggagatggtgataaatgtaatccaaaatgtaaggtgccctgaacatagcgc |
16594399 |
T |
|
| Q |
124 |
agaatgcgcttgagagcaagcatgtgtt |
151 |
Q |
| |
|
|||| |||||||||||| |||||||||| |
|
|
| T |
16594398 |
agaacgcgcttgagagccagcatgtgtt |
16594371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 40270808 - 40271028
Alignment:
| Q |
24 |
aggacattcatcccaatcagcgttggtgtatgagataagctttgtgatggggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataacga |
123 |
Q |
| |
|
||||||| || |||||||||||| ||||| |||||||||||||| ||||| | ||| |||||||||| | ||||||||| ||| ||||||||||| | |
|
|
| T |
40270808 |
aggacatccaccccaatcagcgtcagtgtaggagataagctttgtaatgggagatggggataaatgtagtccaaaatgtaaggtgccctgaacatagcac |
40270907 |
T |
|
| Q |
124 |
agaatgcgcttgagagcaagcatgtgttatgtgttcgg----tgcatgtggaaacaaacttgctgaatcacataagagatgtcgagtctagtgaaggtga |
219 |
Q |
| |
|
| ||||| ||| |||||||||||||||| ||| || |||||||| | |||||||||||||| ||||| || | ||| ||| ||||||||||| |
|
|
| T |
40270908 |
aaaatgcacttaagagcaagcatgtgttccgtgcgaggagcatgcatgtgaagacaaacttgctgaacaacatatgataagtcaggtcgagtgaaggtga |
40271007 |
T |
|
| Q |
220 |
ggtattgtaaggctcttgcaa |
240 |
Q |
| |
|
| ||||||| ||| ||||||| |
|
|
| T |
40271008 |
gatattgtagggcccttgcaa |
40271028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 31731 - 31604
Alignment:
| Q |
24 |
aggacattcatcccaatcagcgttggtgtatgagataagctttgtgatggggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataacga |
123 |
Q |
| |
|
||||||| || |||||||||||| ||||| |||| ||||| ||| ||||| | ||| |||||||||| | ||||||||| ||| ||||||||||| || |
|
|
| T |
31731 |
aggacatccaccccaatcagcgtcagtgtaggagagaagctatgtaatgggagatggggataaatgtagtccaaaatgtaaggtgccctgaacatagcgc |
31632 |
T |
|
| Q |
124 |
agaatgcgcttgagagcaagcatgtgtt |
151 |
Q |
| |
|
| ||||||||| |||||||||||||||| |
|
|
| T |
31631 |
aaaatgcgcttaagagcaagcatgtgtt |
31604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 6088 - 6182
Alignment:
| Q |
26 |
gacattcatcccaatcagcgttggtgtatgagataagctttgtgatggggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataa |
120 |
Q |
| |
|
||||| || |||||||| ||| ||||| ||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
6088 |
gacatccaccccaatcaacgtcagtgtaggagataatctttgtgatgggggatggtgataaatgtaatccaaggtgtatggtaccctgaacataa |
6182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 1546370 - 1546464
Alignment:
| Q |
73 |
gggggtggtgataaatgtaattcaaaatgtatggtaccctgaacataacgaagaatgcgcttgagagcaagcatgtgttatgtgttcggtgcatg |
167 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||||||| |||||| | |||||| |||| ||||||| |||||||| | |||| |||||||| |
|
|
| T |
1546370 |
ggggatggtgataaatgtagaccaaggtgtatggtaccctttacataatggagaatgtgcttaagagcaaccatgtgttctatgttgggtgcatg |
1546464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University