View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6942_low_2 (Length: 286)
Name: NF6942_low_2
Description: NF6942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6942_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 36125989 - 36126178
Alignment:
| Q |
1 |
tacttatattggagctattgacagggaagttccctgcaaattatttgaggcatgggaagggagcaaatgaagatttagcaatgtgggtggaatctatagt |
100 |
Q |
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| T |
36125989 |
tacttatattggagctattgacagggaagttccctgcaaattatttgaggcatgggaagggagcaaatgaagatttagcaatgtgggtggaatctatagt |
36126088 |
T |
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| Q |
101 |
gagggaagggtggagtggagaagtgttggataaaagcataggtggtgggagtagaggtgaagaaggtgagatgttgaagctgttgaggat |
190 |
Q |
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| T |
36126089 |
gagggatgggtggagtggagaagtgttggataaaagcataggtggtgggagtagaggtgaagaaggtgagatgttgaagctgttgaggat |
36126178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 36124088 - 36123998
Alignment:
| Q |
178 |
agctgttgaggatggtaagaaacaaaaggctataatgaagagaatgataatagagatgaattctctttcatgaaacatgattagagttaag |
268 |
Q |
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| T |
36124088 |
agctgttgaggatggtaagaaacaaaaggctatcatgaagagaatgataatagagatgaattctctttcatgaaacatgattagagttaag |
36123998 |
T |
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