View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6942_low_3 (Length: 261)
Name: NF6942_low_3
Description: NF6942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6942_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 34358447 - 34358689
Alignment:
| Q |
19 |
gatgaagagacaagaactcttgcaatgagctcggctcagaagcttcttgactgcaagcaattagtaaaagattattgctctgagatgctgccagtgtctg |
118 |
Q |
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| T |
34358447 |
gatgaagagacaagaactcttgcaatgagctcggctcagaagcttcttgactgcaagcaattagtaaaagattattgctctgagatgctgccagtgtctg |
34358546 |
T |
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| Q |
119 |
atttgtataaattacgtatctcatgtcaggttgaattagttgaccaatctgaagatactgaagccaaaattccaccagaaataattgtgctgcccatgaa |
218 |
Q |
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| T |
34358547 |
atttgtataaactacgtatctcatgtcaggttgaattagttgaccaatctgaagatactgaagccaaaattccaccagaaataattgtgctgcccatgaa |
34358646 |
T |
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| Q |
219 |
cgccacggtgtctgacctaaagattgaagcagcaaaagctttt |
261 |
Q |
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| T |
34358647 |
cgccacggtgtctgacctaaagattgaagcagcaaaagctttt |
34358689 |
T |
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