View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6942_low_6 (Length: 230)
Name: NF6942_low_6
Description: NF6942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6942_low_6 |
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| [»] scaffold0479 (1 HSPs) |
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| [»] scaffold0210 (3 HSPs) |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12727407 - 12727625
Alignment:
| Q |
1 |
aatacaaaaaacttaatcaaagtttaacctaattagcctcttataaatatagttgagctcactattttgataaaagtggagagaaacaacgccactgctt |
100 |
Q |
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|||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||||| |
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| T |
12727407 |
aatataaaaaacttaatcgaagtttaacctagttagcctcttataaatatagctgaacacactattttgataaaagtggagagaaacaacgccgctgctt |
12727506 |
T |
|
| Q |
101 |
agacgtccctctctttagttatgctgatatccaattagtacacgacgattccgtgctacttcattctaaccagaccagcaatacatatgaggttaatttg |
200 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12727507 |
aggcgtccctctctttcgttatgctgatatccaattagtacacgacgattctgtgctacttcattctaaccagaccagcaatacatatgaggttaatttc |
12727606 |
T |
|
| Q |
201 |
cagtcgctcatctattcat |
219 |
Q |
| |
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|||||| |||||||||||| |
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| T |
12727607 |
cagtcgttcatctattcat |
12727625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12720332 - 12720549
Alignment:
| Q |
1 |
aatacaaaaaacttaatcaaagtttaacctaattagcctcttataaatatagttgagctcactattttgataaaagtggagagaaacaacgccactgctt |
100 |
Q |
| |
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|||| ||||| ||||||| || ||||||||| ||||||| ||||||||| |||||||| || ||||||| ||| |||||| | ||||||||| |||||| |
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| T |
12720332 |
aatataaaaatcttaatcgaaatttaacctagttagccttatataaatatggttgagctaaccattttgacaaa-gtggagtggaacaacgccgctgctt |
12720430 |
T |
|
| Q |
101 |
agacgtccctctctttagttatgctgatatccaattagtacacgacgattccgtgctacttcattctaaccagaccagcaatacatatgaggttaatttg |
200 |
Q |
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| | |||||||||| ||||||||| || |||||||| ||||||||||| |||||||| ||||||||| | || || |||||||||||||||| | |
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| T |
12720431 |
aagcacccctctctttggttatgctggtacgcaattagttcacgacgattcgatgctactttgttctaaccatatcaacattacatatgaggttaatctt |
12720530 |
T |
|
| Q |
201 |
cagtcgctcatctattcat |
219 |
Q |
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|||| | |||||| ||||| |
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| T |
12720531 |
cagttgttcatcttttcat |
12720549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 12712616 - 12712818
Alignment:
| Q |
17 |
tcaaagtttaacctaattagcctcttataaatatagttgagctcactattttgataaaagtggagagaaacaacgccactgcttagacgtccctctcttt |
116 |
Q |
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||||| ||||||||| ||| |||||||||||||| || |||||||| ||||||| | |||| |||| ||| |||| |||||| |||| || ||||| |
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| T |
12712616 |
tcaaaatttaacctagttaacctcttataaatatggtggagctcaccattttgacataagtcaagaggaacggcgccgttgcttaagcgtctctttcttt |
12712715 |
T |
|
| Q |
117 |
agttatgctgatatccaattagtacacgacgattccgtgctacttcattctaaccagaccagcaatacatatgaggttaatttgcagtcgctcatctatt |
216 |
Q |
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|
||||| |||||| |||||| |||| |||||||||| |||||||||||||| | ||||| |||||||||||||||||| | ||| ||||||||| || |
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| T |
12712716 |
gattatgttgatatgcaattaccacacaacgattccgttctacttcattctaagtataccaggaatacatatgaggttaatcttcagacgctcatctttt |
12712815 |
T |
|
| Q |
217 |
cat |
219 |
Q |
| |
|
||| |
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|
| T |
12712816 |
cat |
12712818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 8943 - 8730
Alignment:
| Q |
6 |
aaaaaacttaatcaaagtttaacctaattagcctcttataaatatagttgagctcactattttgataaaagtggagagaaacaacgccactgcttagacg |
105 |
Q |
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|
|||||||||||| |||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
8943 |
aaaaaacttaattgaagtttaacctagttagcctcttataaatatagctgaacacactattttgataaaagtggagagaaacaacgctgctgcttaggcg |
8844 |
T |
|
| Q |
106 |
tccctctctttagttatgctgatatccaattagtacacgacgattccgtgctacttcattctaaccagaccagcaatacatatgaggttaatttgcagtc |
205 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8843 |
tccctttctttcgttatgctgatatccaattagtacacgacgattccgtgctacttcattctaaccagaccagcaatacatatgaggttaatttccagtc |
8744 |
T |
|
| Q |
206 |
gctcatctattcat |
219 |
Q |
| |
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| |||||||||||| |
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| T |
8743 |
gttcatctattcat |
8730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 621 - 409
Alignment:
| Q |
1 |
aatacaaaaaacttaatcaaagtttaacctaattagcctcttataaatatagttgagctcactattttgataaaagtggagagaaacaacgccactgctt |
100 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |
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| T |
621 |
aatacgaaaaacttaatcgaagtttaacctagttagcctcttataaatatagttgagcacaccattttgataaaagtggagagaaacaacgccgttgc-- |
524 |
T |
|
| Q |
101 |
agacgtccctctctttagttatgctgatatccaattagtacacgacgattccgtgctacttcattctaaccagaccagcaatacatatgaggttaatttg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
523 |
----gtccctctctttggttatgctgatatccaattagtacacgacgattccgtgctacttcattctaaccagactagcaatacatatgagattaatttg |
428 |
T |
|
| Q |
201 |
cagtcgctcatctattcat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
427 |
cagtcgctcatctattcat |
409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 12227 - 12031
Alignment:
| Q |
23 |
tttaacctaattagcctcttataaatatagttgagctcactattttgataaaagtggagagaaacaacgccactgcttagacgtccctctctttagttat |
122 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||||| ||||||| | |||| |||| ||||||| | ||||||| ||||||| ||||| ||||| |
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|
| T |
12227 |
tttaacctagttagcctcttatatatatggttgagctcaccattttgacataagtcaagaggaacaacgtcgttgcttaggcgtccctttctttggttat |
12128 |
T |
|
| Q |
123 |
gctgatatccaattagtacacgacgattccgtgctacttcattctaaccagaccagcaatacatatgaggttaatttgcagtcgctcatctattcat |
219 |
Q |
| |
|
|||| ||| |||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||| |
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|
| T |
12127 |
gctggtatgcaattagtacacagcgattccattctacttcattctaagcagaccagcaatacatatgaggttaatcttcagtcgctcatcttttcat |
12031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4336 - 4119
Alignment:
| Q |
1 |
aatacaaaaaacttaatcaaagtttaacctaattagcctcttataaatatagttgagctcactattttgataaaagtggagagaaacaacgccactgctt |
100 |
Q |
| |
|
|||| ||||| ||||||| || ||||||||| |||||| ||||||||||| |||||| || ||||||| || |||||||| ||||||||| |||||| |
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|
| T |
4336 |
aatataaaaatcttaatcgaaatttaacctagttagccacttataaatatgtttgagccaaccattttgacaag-gtggagaggaacaacgccgctgctt |
4238 |
T |
|
| Q |
101 |
agacgtccctctctttagttatgctgatatccaattagtacacgacgattccgtgctacttcattctaaccagaccagcaatacatatgaggttaatttg |
200 |
Q |
| |
|
| | ||||||| || ||||||||| ||| |||||||||||||||||||| || ||||| |||||||||||| || ||||||||||||||||||| | |
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|
| T |
4237 |
aagcacccctctccttggttatgctggtatgcaattagtacacgacgattcgatgttactttattctaaccagatcaacaatacatatgaggttaatctt |
4138 |
T |
|
| Q |
201 |
cagtcgctcatctattcat |
219 |
Q |
| |
|
|||| | |||||| ||||| |
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|
| T |
4137 |
cagttgttcatcttttcat |
4119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 1620 - 1425
Alignment:
| Q |
1 |
aatacaaaaaacttaatcaaagtttaacctaattagcctcttataaatatagttgagctcactattttgataaaagtggagagaaacaacgccactgctt |
100 |
Q |
| |
|
|||| ||||| ||||||| || ||||||||| |||||||| ||||||||| |||||||| || ||||||| ||| |||||||| ||||||||| |||||| |
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|
| T |
1620 |
aatataaaaatcttaatcgaaatttaacctagttagcctcgtataaatatggttgagctaaccattttgacaaa-gtggagaggaacaacgccgctgctt |
1522 |
T |
|
| Q |
101 |
agacgtccctctctttagttatgctgatatccaattagtacacgacgattccgtgctacttcattctaaccagaccagcaatacatatgaggttaat |
197 |
Q |
| |
|
| | || ||||||| ||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||| |
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|
| T |
1521 |
aagcacccttctctttggttatgctggtatgcaattagtacacgacgattcgatgctactttattctaaccagatcaacaatacatatgaggttaat |
1425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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