View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6943_high_1 (Length: 367)
Name: NF6943_high_1
Description: NF6943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6943_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 92 - 349
Target Start/End: Original strand, 45090228 - 45090485
Alignment:
| Q |
92 |
tatgcaaataaaatttgattattttggcttggaatcttatgtggtgattatgatgtttaggaggctagaagctgatcgtttcttcacaacaaatttcaac |
191 |
Q |
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| T |
45090228 |
tatgaaaataaaatttgattattttggtttggaatcttatgtggtgattatgatgtttaggaggctagaagctgatcgtttcttcacaacaaatttcaac |
45090327 |
T |
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| Q |
192 |
tcaaaaacatacacaaaccaaggttttgaatgggtaaacaaaacagagtctttgaaggatgtgattgacaggcacttccctgatatgactaaaaattgga |
291 |
Q |
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| T |
45090328 |
tcaaaaacatacacaaaccaaggttttgaatgggtaaacaaaacagagtctttgaaggatgtgattgacaggcacttccctgagatgactaaaaattgga |
45090427 |
T |
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| Q |
292 |
tgacaagctcaagtgcattctctgtgtgggattcaatgccagatcctaagaaatacat |
349 |
Q |
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| T |
45090428 |
tgacaagctcaagtgcattctctgtgtgggattcaatgccagatcctaagaaatacat |
45090485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 45090149 - 45090216
Alignment:
| Q |
1 |
gggtttgctataagtgagactgctttctttatctttgtgatcatggcttcaaggtaagttttaagcac |
68 |
Q |
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| T |
45090149 |
gggtttgctataagtgagactgctttctttatctttgtgatcatggcttcaaggtaagttttaagcac |
45090216 |
T |
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