View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6943_low_2 (Length: 353)
Name: NF6943_low_2
Description: NF6943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6943_low_2 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 227555 - 227220
Alignment:
| Q |
1 |
atgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
227555 |
atgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatc |
227456 |
T |
|
| Q |
101 |
aaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaaccggaaatcgagatgatggtaatttattaaagaactcaatttccgagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
227455 |
aaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaactggaaatcgtgatgatggtaatttattgaagaactcaatttccgagga |
227356 |
T |
|
| Q |
201 |
gatattcgatctctttttgcagtcaatatttcagaatactgcctcagaggttgtgaaaggtgaagatggaaagaacaaggtgatgggaactccaacagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
227355 |
gatattcgatctctttttgcagtcaatatttcagaatactgcctcagaggttgtgaaaggtgaagatggaaagaacaaggtgatgggaactccaacagaa |
227256 |
T |
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| Q |
301 |
tcagcattgcttggatttggtttgattttaggaggt |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
227255 |
tcagcattgcttggatttggtttgattttaggaggt |
227220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 14589823 - 14590158
Alignment:
| Q |
1 |
atgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14589823 |
atgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatc |
14589922 |
T |
|
| Q |
101 |
aaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaaccggaaatcgagatgatggtaatttattaaagaactcaatttccgagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
14589923 |
aaatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaactggaaatcgtgatgatggtaatttattgaagaactcaatttccgagga |
14590022 |
T |
|
| Q |
201 |
gatattcgatctctttttgcagtcaatatttcagaatactgcctcagaggttgtgaaaggtgaagatggaaagaacaaggtgatgggaactccaacagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14590023 |
gatattcgatctctttttgcagtcaatatttcagaatactgcctcagaggttgtgaaaggtgaagatggaaagaacaaggtgatgggaactccaacagaa |
14590122 |
T |
|
| Q |
301 |
tcagcattgcttggatttggtttgattttaggaggt |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
14590123 |
tcagcattgcttggatttggtttgattttaggaggt |
14590158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 1610548 - 1610679
Alignment:
| Q |
1 |
atgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatc |
100 |
Q |
| |
|
|||||||||| ||| ||||| ||||| | ||||||||||| || |||||||| ||| |||| |||||||||||||| || ||||| |||| || || | |
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| T |
1610548 |
atgaatgatagggcgcttgtcagacatctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacaggaacgttgatgaccaacc |
1610647 |
T |
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| Q |
101 |
aaatggttgttgacaaaatatggatttgtgaa |
132 |
Q |
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| T |
1610648 |
atatggtggttgataaaatttggatatgtgaa |
1610679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 1624933 - 1625064
Alignment:
| Q |
1 |
atgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatc |
100 |
Q |
| |
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|||||||||| ||| ||||| ||||| | ||||||||||| || |||||||| ||| |||| |||||||||||||| || ||||| |||| || || | |
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| T |
1624933 |
atgaatgatagggcgcttgtcagacatctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacaggaacgttgatgaccaacc |
1625032 |
T |
|
| Q |
101 |
aaatggttgttgacaaaatatggatttgtgaa |
132 |
Q |
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| T |
1625033 |
atatggtggttgataaaatttggatatgtgaa |
1625064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 40199024 - 40199198
Alignment:
| Q |
4 |
aatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatcaaa |
103 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40199024 |
aatgagaaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatcaaa |
40199123 |
T |
|
| Q |
104 |
tggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaaccggaaatcgagatgatggtaatttat |
178 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| | ||||||| |
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| T |
40199124 |
tggttgttgacaaaatatggatttgtgaacaaacgaagccgattaaaagcggaaatcgtgatgattgaaatttat |
40199198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 40199197 - 40199267
Alignment:
| Q |
266 |
atggaaagaacaaggtgatgggaactccaacagaatcagcattgcttggatttggtttgattttaggaggt |
336 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |
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| T |
40199197 |
atggaaagaacaaggtgatgggaactccaacaaaatcagcattgcttggttttggtttgattttaagaggt |
40199267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37757113 - 37757244
Alignment:
| Q |
1 |
atgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatc |
100 |
Q |
| |
|
|||||||| | ||||||||| ||||| | ||||| ||||| || |||||||| ||| |||| |||||||| ||||| || || || || || || || | |
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| T |
37757113 |
atgaatgacatggcacttgtgagacatctttctgcttgtgagactatgggttcagctagttgcatttgcacagataagacagggacattaacaactaacc |
37757212 |
T |
|
| Q |
101 |
aaatggttgttgacaaaatatggatttgtgaa |
132 |
Q |
| |
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| ||||| ||| ||||||||||||| |||||| |
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| T |
37757213 |
atatggtggttaacaaaatatggatatgtgaa |
37757244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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