View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6943_low_3 (Length: 316)
Name: NF6943_low_3
Description: NF6943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6943_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 45090156 - 45089895
Alignment:
| Q |
1 |
gcaaacccttttatcttcttctcagcatggagaccaactatcaagtccagcttctcaacatcatcatcatatacctctttgagagcttcaataacctctt |
100 |
Q |
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| T |
45090156 |
gcaaaccctttgatcttcttctcagcatgtagaccaactatcaagtccagcttctcaacatcatcatcatatacctctttgagagcttcattaacctctt |
45090057 |
T |
|
| Q |
101 |
catcatctgttaaatcttcccacttactaattgggatcattagcatgtttcttctgaattcattatatctcgctactcccctttctctatctctataaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45090056 |
catcatctgttaaatcttcccacttactaattgggatcattagcatgtttcttctgaattcattatatctcgctactcccctttctctatctctataaac |
45089957 |
T |
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| Q |
201 |
tagtaaacaaaatattcatcattttagaacaagttgatcatataaaattattacaaaaccat |
262 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45089956 |
tagtaaacaaaatattcatcattttataacaagttgatcatataaaattattacaaaaccat |
45089895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 45089875 - 45089831
Alignment:
| Q |
262 |
taccttccatagtagccatgtcaactggatcaggtctttcttctc |
306 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45089875 |
taccttccatagtagctatgtcaactggatcaggtctttcttctc |
45089831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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