View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6943_low_4 (Length: 244)
Name: NF6943_low_4
Description: NF6943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6943_low_4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 1984634 - 1984412
Alignment:
| Q |
22 |
gaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattttgatgctaaaa |
121 |
Q |
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| T |
1984634 |
gaggaaatcgctattccttctgttgaacaacttgtgactgcaggggttaatttcttacctgcaaaaggaagcatatcaagcattagttttgatgctaaaa |
1984535 |
T |
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| Q |
122 |
caaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttggatccggaccttt |
221 |
Q |
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| T |
1984534 |
caaacacttttcaccttcccacaattagtttggatgtcaacaccgaagtttttcttcgaaacttggttgcatacgaatcatcggttggatcgggaccttt |
1984435 |
T |
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| Q |
222 |
ggttataactcgttacacggaat |
244 |
Q |
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| T |
1984434 |
ggttataactcgttacacggaat |
1984412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 1977710 - 1977491
Alignment:
| Q |
25 |
gaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattttgatgctaaaacaa |
124 |
Q |
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| T |
1977710 |
gaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaatggaagcatatcaagcattagttttgatgctaaaacaa |
1977611 |
T |
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| Q |
125 |
acacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttggatccggacctttggt |
224 |
Q |
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| T |
1977610 |
acacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaacttggttgcatatgaatcatcggttggatcgggacctttggt |
1977511 |
T |
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| Q |
225 |
tataactcgttacacggaat |
244 |
Q |
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| T |
1977510 |
tataactcgttacacagaat |
1977491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 1948696 - 1948915
Alignment:
| Q |
25 |
gaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattttgatgctaaaacaa |
124 |
Q |
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||||||||||||||||||||| || ||||||||| | || || ||||| | ||||| ||||| ||||||||||| |||| ||||||||| ||||||| |
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| T |
1948696 |
gaaatcactattccttctgttaaagaacttgtgaaatcaggagtgaatttttctcctactaatgggagcatatcaagtattagttttgatgcaaaaacaa |
1948795 |
T |
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| Q |
125 |
acacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttggatccggacctttggt |
224 |
Q |
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| T |
1948796 |
gaactttttaccttcctattatcggtttggatgttaataccgaagtttttctaagaaacttggttgcgtatgaatcatcggttggatcgggaccattggt |
1948895 |
T |
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| Q |
225 |
tataactcgttacacggaat |
244 |
Q |
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| T |
1948896 |
tataacacggtacaccgaat |
1948915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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