View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6944_high_7 (Length: 250)
Name: NF6944_high_7
Description: NF6944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6944_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 51350157 - 51350394
Alignment:
| Q |
11 |
agaatatcacagtgacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaactcacc-taaatgc |
109 |
Q |
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| T |
51350157 |
agaatatcacagtgacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaattcaccataaatgc |
51350256 |
T |
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| Q |
110 |
gaatgtgcactcatgatgatgatggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagat |
209 |
Q |
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| T |
51350257 |
gaatgtgcactcatagtgat---ggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagat |
51350353 |
T |
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| Q |
210 |
atctctgcattaattgatatctaccacttgtgataatctat |
250 |
Q |
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| T |
51350354 |
atctctgcattaattgatatctaccacttgtgataatctat |
51350394 |
T |
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