View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6944_low_1 (Length: 589)

Name: NF6944_low_1
Description: NF6944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6944_low_1
NF6944_low_1
[»] chr1 (32 HSPs)
chr1 (18-391)||(4882568-4882934)
chr1 (454-569)||(424319-424434)
chr1 (454-569)||(12871599-12871714)
chr1 (454-575)||(7995583-7995703)
chr1 (456-569)||(32784088-32784201)
chr1 (470-569)||(4882387-4882486)
chr1 (454-569)||(27534677-27534792)
chr1 (458-569)||(3232770-3232881)
chr1 (458-569)||(20411555-20411666)
chr1 (454-569)||(33487058-33487173)
chr1 (458-569)||(14265266-14265377)
chr1 (454-569)||(18343592-18343707)
chr1 (454-569)||(28678158-28678273)
chr1 (454-569)||(42490871-42490986)
chr1 (458-569)||(29205267-29205378)
chr1 (458-569)||(13488564-13488675)
chr1 (454-569)||(45750456-45750571)
chr1 (471-569)||(37822373-37822471)
chr1 (484-569)||(10627008-10627093)
chr1 (454-569)||(45193654-45193769)
chr1 (486-569)||(44517157-44517240)
chr1 (458-569)||(4871054-4871165)
chr1 (502-569)||(51418040-51418106)
chr1 (503-569)||(29726624-29726690)
chr1 (454-564)||(42276335-42276444)
chr1 (461-557)||(17347584-17347679)
chr1 (520-569)||(15391280-15391329)
chr1 (454-517)||(33939082-33939145)
chr1 (458-570)||(32878690-32878799)
chr1 (528-569)||(15791303-15791344)
chr1 (505-569)||(28399349-28399414)
chr1 (455-531)||(15791554-15791630)
[»] scaffold0312 (1 HSPs)
scaffold0312 (454-569)||(6115-6230)
[»] chr5 (30 HSPs)
chr5 (454-569)||(17331306-17331421)
chr5 (454-569)||(28040607-28040722)
chr5 (460-569)||(17699537-17699646)
chr5 (454-569)||(32347742-32347858)
chr5 (458-569)||(27241046-27241157)
chr5 (454-569)||(33164496-33164611)
chr5 (456-569)||(29097769-29097882)
chr5 (454-569)||(6281022-6281137)
chr5 (454-569)||(43493850-43493965)
chr5 (454-569)||(17096267-17096385)
chr5 (459-569)||(178134-178244)
chr5 (454-569)||(6635227-6635343)
chr5 (459-569)||(42609127-42609237)
chr5 (454-574)||(26295081-26295201)
chr5 (461-569)||(34431045-34431153)
chr5 (486-569)||(39179856-39179939)
chr5 (459-569)||(12439662-12439771)
chr5 (454-567)||(3740336-3740448)
chr5 (455-569)||(20483165-20483279)
chr5 (506-569)||(12891706-12891769)
chr5 (454-569)||(23882144-23882259)
chr5 (458-569)||(39531432-39531540)
chr5 (489-569)||(3079333-3079413)
chr5 (458-546)||(981076-981164)
chr5 (485-569)||(17687214-17687298)
chr5 (458-548)||(6681923-6682013)
chr5 (454-515)||(7771888-7771949)
chr5 (469-569)||(42396540-42396640)
chr5 (502-569)||(18653808-18653875)
chr5 (528-569)||(2555378-2555419)
[»] chr8 (35 HSPs)
chr8 (456-569)||(41361712-41361825)
chr8 (454-569)||(1810256-1810370)
chr8 (458-569)||(10338858-10338969)
chr8 (454-569)||(24791204-24791319)
chr8 (454-569)||(30026916-30027031)
chr8 (454-569)||(37612631-37612746)
chr8 (454-569)||(39067725-39067840)
chr8 (454-569)||(10147924-10148040)
chr8 (454-569)||(14600734-14600849)
chr8 (454-569)||(2025245-2025360)
chr8 (459-569)||(9501572-9501683)
chr8 (454-569)||(11161860-11161975)
chr8 (458-569)||(31202440-31202551)
chr8 (454-569)||(31407784-31407899)
chr8 (458-569)||(2234506-2234617)
chr8 (458-575)||(12329608-12329725)
chr8 (454-569)||(13570762-13570877)
chr8 (454-569)||(31308120-31308241)
chr8 (454-567)||(23971132-23971245)
chr8 (461-568)||(1039930-1040037)
chr8 (477-569)||(15288834-15288926)
chr8 (477-569)||(15469203-15469295)
chr8 (502-569)||(37128522-37128589)
chr8 (461-567)||(3204794-3204899)
chr8 (458-557)||(24699812-24699913)
chr8 (515-569)||(7579891-7579945)
chr8 (512-569)||(22787528-22787585)
chr8 (460-569)||(2968513-2968625)
chr8 (502-557)||(4757191-4757246)
chr8 (460-547)||(30039389-30039476)
chr8 (461-547)||(10334159-10334245)
chr8 (454-510)||(7583859-7583915)
chr8 (487-569)||(32778986-32779069)
chr8 (454-524)||(13576257-13576326)
chr8 (483-544)||(28297169-28297230)
[»] chr7 (44 HSPs)
chr7 (454-569)||(42603797-42603912)
chr7 (458-569)||(28664940-28665051)
chr7 (456-569)||(5684345-5684458)
chr7 (456-569)||(5709395-5709508)
chr7 (454-569)||(11832996-11833112)
chr7 (454-568)||(45457585-45457699)
chr7 (457-569)||(17473751-17473863)
chr7 (457-569)||(17579351-17579463)
chr7 (454-569)||(46026057-46026172)
chr7 (456-557)||(9785297-9785398)
chr7 (454-569)||(21990639-21990755)
chr7 (454-570)||(48304422-48304538)
chr7 (458-569)||(1281165-1281276)
chr7 (458-569)||(10574363-10574474)
chr7 (454-569)||(21603441-21603555)
chr7 (454-569)||(36579340-36579455)
chr7 (458-568)||(39533004-39533114)
chr7 (456-557)||(22747548-22747648)
chr7 (454-569)||(42644654-42644769)
chr7 (470-569)||(2622586-2622685)
chr7 (454-568)||(41287935-41288050)
chr7 (454-569)||(45482042-45482157)
chr7 (454-569)||(3266360-3266481)
chr7 (454-554)||(6667373-6667474)
chr7 (502-569)||(10094467-10094534)
chr7 (502-569)||(15674640-15674707)
chr7 (454-553)||(17509248-17509346)
chr7 (454-553)||(17543868-17543966)
chr7 (454-569)||(27535434-27535551)
chr7 (458-575)||(32740734-32740851)
chr7 (489-568)||(43847083-43847162)
chr7 (463-569)||(24320251-24320357)
chr7 (458-569)||(21954846-21954957)
chr7 (470-569)||(4621395-4621494)
chr7 (478-569)||(32643014-32643105)
chr7 (462-554)||(9720017-9720103)
chr7 (458-538)||(39707272-39707351)
chr7 (503-569)||(14657849-14657917)
chr7 (454-566)||(17221643-17221754)
chr7 (458-510)||(36719628-36719680)
chr7 (454-498)||(40761567-40761611)
chr7 (524-564)||(40761659-40761699)
chr7 (534-569)||(26161038-26161073)
chr7 (506-568)||(29352275-29352338)
[»] chr3 (42 HSPs)
chr3 (454-569)||(48652476-48652591)
chr3 (454-569)||(36691835-36691950)
chr3 (454-569)||(11819061-11819176)
chr3 (458-569)||(32080790-32080901)
chr3 (454-569)||(3456921-3457036)
chr3 (454-569)||(14585440-14585555)
chr3 (458-569)||(31270308-31270419)
chr3 (454-569)||(31462782-31462897)
chr3 (456-569)||(54239054-54239167)
chr3 (454-569)||(13702008-13702123)
chr3 (454-569)||(34960894-34961009)
chr3 (454-569)||(53155466-53155581)
chr3 (454-569)||(49628123-49628239)
chr3 (454-569)||(55090619-55090734)
chr3 (454-568)||(1074931-1075044)
chr3 (454-563)||(30156324-30156432)
chr3 (456-569)||(35174684-35174797)
chr3 (454-569)||(4206547-4206662)
chr3 (454-569)||(36624730-36624845)
chr3 (454-569)||(38527241-38527356)
chr3 (459-569)||(40013308-40013421)
chr3 (454-569)||(48400877-48400992)
chr3 (454-569)||(39610182-39610305)
chr3 (476-569)||(22484965-22485058)
chr3 (470-569)||(24483714-24483813)
chr3 (456-569)||(40883904-40884018)
chr3 (454-554)||(27189445-27189545)
chr3 (505-569)||(41868330-41868394)
chr3 (458-569)||(19645203-19645314)
chr3 (486-568)||(4817867-4817949)
chr3 (520-569)||(34103753-34103802)
chr3 (460-537)||(53402614-53402691)
chr3 (500-569)||(33637427-33637496)
chr3 (502-569)||(106071-106139)
chr3 (506-569)||(2147756-2147820)
chr3 (520-569)||(3312487-3312536)
chr3 (454-554)||(19861331-19861428)
chr3 (343-383)||(4512853-4512893)
chr3 (486-557)||(54706716-54706788)
chr3 (459-509)||(48854889-48854939)
chr3 (526-569)||(4219229-4219273)
chr3 (454-497)||(49628194-49628238)
[»] chr6 (23 HSPs)
chr6 (454-569)||(12481398-12481513)
chr6 (454-569)||(15590107-15590222)
chr6 (454-569)||(21507836-21507951)
chr6 (454-569)||(8693685-8693803)
chr6 (454-569)||(6419886-6420001)
chr6 (454-557)||(14783211-14783314)
chr6 (454-569)||(23654228-23654343)
chr6 (458-569)||(31937448-31937557)
chr6 (454-569)||(2304838-2304953)
chr6 (455-568)||(35219933-35220045)
chr6 (455-569)||(19402836-19402950)
chr6 (456-569)||(4921909-4922023)
chr6 (483-569)||(4393777-4393863)
chr6 (460-529)||(29927447-29927516)
chr6 (520-565)||(23638150-23638195)
chr6 (505-569)||(6296277-6296341)
chr6 (505-569)||(6303087-6303151)
chr6 (513-554)||(31937574-31937615)
chr6 (517-557)||(15057722-15057762)
chr6 (528-569)||(29927122-29927163)
chr6 (454-518)||(4084996-4085060)
chr6 (476-569)||(31705170-31705258)
chr6 (507-568)||(2488169-2488231)
[»] chr4 (50 HSPs)
chr4 (454-569)||(29268805-29268920)
chr4 (454-569)||(6911658-6911773)
chr4 (454-569)||(7060302-7060417)
chr4 (454-569)||(30202016-30202131)
chr4 (454-569)||(43244409-43244524)
chr4 (454-569)||(44757070-44757185)
chr4 (456-569)||(8712510-8712623)
chr4 (456-568)||(51152105-51152217)
chr4 (455-567)||(394304-394416)
chr4 (454-569)||(22757072-22757187)
chr4 (454-569)||(24825627-24825742)
chr4 (458-568)||(26742492-26742602)
chr4 (454-570)||(39837572-39837689)
chr4 (461-569)||(13965545-13965653)
chr4 (456-568)||(31521962-31522074)
chr4 (454-569)||(478040-478154)
chr4 (456-575)||(19745369-19745488)
chr4 (456-575)||(19794318-19794437)
chr4 (454-569)||(24568741-24568856)
chr4 (454-569)||(25658145-25658260)
chr4 (458-569)||(26674354-26674465)
chr4 (478-569)||(6881958-6882049)
chr4 (454-569)||(24611827-24611942)
chr4 (463-569)||(7083844-7083950)
chr4 (454-569)||(24100117-24100234)
chr4 (456-569)||(27394810-27394923)
chr4 (469-569)||(38944176-38944275)
chr4 (454-569)||(11210341-11210456)
chr4 (462-569)||(20399931-20400038)
chr4 (459-569)||(5814330-5814440)
chr4 (454-569)||(29922812-29922930)
chr4 (454-569)||(626577-626690)
chr4 (458-554)||(7861248-7861344)
chr4 (502-569)||(39523435-39523502)
chr4 (464-569)||(45351098-45351205)
chr4 (464-569)||(45360577-45360684)
chr4 (484-569)||(50801225-50801310)
chr4 (458-557)||(22049444-22049543)
chr4 (459-569)||(12717145-12717255)
chr4 (490-557)||(43493327-43493394)
chr4 (463-569)||(20887784-20887889)
chr4 (512-569)||(8517484-8517541)
chr4 (454-546)||(7084184-7084276)
chr4 (454-570)||(3159021-3159137)
chr4 (485-569)||(2447809-2447893)
chr4 (476-569)||(36124377-36124468)
chr4 (462-554)||(13586284-13586370)
chr4 (507-568)||(27090755-27090817)
chr4 (458-570)||(29235293-29235405)
chr4 (456-554)||(42197533-42197630)
[»] chr2 (44 HSPs)
chr2 (454-569)||(12704665-12704780)
chr2 (454-569)||(43474156-43474271)
chr2 (454-569)||(9690001-9690116)
chr2 (454-569)||(20561160-20561275)
chr2 (454-569)||(22597113-22597228)
chr2 (454-569)||(25067830-25067945)
chr2 (458-569)||(27095687-27095798)
chr2 (458-569)||(44942267-44942378)
chr2 (454-554)||(17268167-17268267)
chr2 (454-569)||(9978697-9978812)
chr2 (455-569)||(13740688-13740801)
chr2 (454-562)||(11937893-11938002)
chr2 (454-569)||(5754266-5754381)
chr2 (454-569)||(38535333-38535448)
chr2 (454-569)||(15919852-15919966)
chr2 (454-557)||(18089432-18089535)
chr2 (458-569)||(33012059-33012170)
chr2 (461-569)||(35333490-35333598)
chr2 (455-569)||(4739310-4739422)
chr2 (454-569)||(7072976-7073091)
chr2 (454-569)||(31908844-31908959)
chr2 (454-569)||(36867986-36868101)
chr2 (458-569)||(4604335-4604446)
chr2 (454-569)||(34416789-34416904)
chr2 (454-569)||(32015198-32015317)
chr2 (469-569)||(10287034-10287133)
chr2 (464-569)||(34470952-34471059)
chr2 (454-557)||(34963106-34963208)
chr2 (454-553)||(38384486-38384585)
chr2 (500-570)||(4426685-4426755)
chr2 (454-569)||(13879034-13879157)
chr2 (454-569)||(14019159-14019282)
chr2 (454-569)||(28231125-28231240)
chr2 (458-569)||(28261916-28262032)
chr2 (502-569)||(32314468-32314535)
chr2 (464-569)||(4732059-4732163)
chr2 (460-569)||(11798544-11798653)
chr2 (458-557)||(17767591-17767690)
chr2 (454-498)||(12891188-12891232)
chr2 (502-569)||(6431415-6431483)
chr2 (529-569)||(12891147-12891187)
chr2 (486-569)||(17792483-17792567)
chr2 (353-391)||(8799510-8799548)
chr2 (494-569)||(20607340-20607416)
[»] scaffold1379 (2 HSPs)
scaffold1379 (454-569)||(1114-1229)
scaffold1379 (502-557)||(1-56)
[»] scaffold0321 (1 HSPs)
scaffold0321 (469-569)||(7152-7252)
[»] scaffold0056 (1 HSPs)
scaffold0056 (454-569)||(74142-74257)
[»] scaffold0536 (1 HSPs)
scaffold0536 (454-569)||(2878-2995)
[»] scaffold0155 (1 HSPs)
scaffold0155 (459-569)||(35065-35177)
[»] scaffold0001 (1 HSPs)
scaffold0001 (454-569)||(404286-404401)
[»] scaffold0432 (1 HSPs)
scaffold0432 (456-568)||(2446-2557)
[»] scaffold0121 (1 HSPs)
scaffold0121 (454-569)||(13273-13392)
[»] scaffold1350 (1 HSPs)
scaffold1350 (454-569)||(1553-1667)
[»] scaffold0294 (1 HSPs)
scaffold0294 (461-569)||(4095-4202)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 4882934 - 4882568
Alignment:
Q  18 aaaatgtgtttatatttagtattcaacaatgtctcaaatattattaattactatgtgaagagattactaaagaaaattattttcttgtttccagtgaagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  4882934 aaaatgtgtttatatttagtattcaacaatgtctcaaatatt------tactatgtgaagagattactaaagaaagttattttcttgtttctagtgaagt 4882841  T
Q  118 aagtaatcaggaggaaatgaacatcaataggtgtagtaaaacaggttcaatctgtcagaccagtttgtttagtctgctatttttgaccagatgaacttcc 217  Q
    |||||  |||||||||||| ||||||||||||||||||||| |||||||||||||| || | |||||||||| | | |||||||||||||||||||||||    
T  4882840 aagtatccaggaggaaatggacatcaataggtgtagtaaaataggttcaatctgtcggatcggtttgtttagcccgttatttttgaccagatgaacttcc 4882741  T
Q  218 attttgaacttgtcgcttttagttgactcgtcccattaaacttgttgaaaaaatggggtggggcagagacagggccgacctgcatgccaactcgtcaacc 317  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4882740 attttgaacttgccgcttttagttgactcgtcccgttaaacttgttgaaaaaatggggtggggcagagacagggccgacctgcatgccaactcgtcaacc 4882641  T
Q  318 tgcaatttatttaannnnnnnnactaatgggtcaaacataatttaaagtgaagcgaccaaataactcattataa 391  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4882640 tgcaatttatttaa-tttttttactaatgggtcaaacataatttaaagtgaagcgaccaaataactcattataa 4882568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 424434 - 424319
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  424434 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttcacatattttctgttt 424335  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  424334 tctttcgtttgttttt 424319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 12871599 - 12871714
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  12871599 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttcattatatcctaatcgaataagtgatttcacatattttcagttt 12871698  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  12871699 tctttcgtttgttttt 12871714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 454 - 575
Target Start/End: Complemental strand, 7995703 - 7995583
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7995703 agaggggtgatttagggtcaattttgacccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgatttcacatattttctgttt 7995604  T
Q  554 tcttacgtttgttttttgtgat 575  Q
    |||| | ||| |||||||||||    
T  7995603 tctt-ccttttttttttgtgat 7995583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 456 - 569
Target Start/End: Original strand, 32784088 - 32784201
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| |||||| ||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  32784088 aggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccttattgaataagtgatttcacatattttctgttttc 32784187  T
Q  556 ttacgtttgttttt 569  Q
    ||  ||||||||||    
T  32784188 ttttgtttgttttt 32784201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 470 - 569
Target Start/End: Complemental strand, 4882486 - 4882387
Alignment:
Q  470 gtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4882486 gtcaatttcgacccaaaaatcacccctccgatttgtttttcattatatcctaattgaataagtgatttcacatattttctgttttctttcgtttgttttt 4882387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 27534677 - 27534792
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||| ||||||| |||||| |||||||||||||||| |||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  27534677 agagggatgatttagggtcaattttgacccaaaaatcatccctccgatttgtttttccttctaccttaattgaataagtgatttcacatattttctgttt 27534776  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  27534777 tctttcgtttgttttt 27534792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 3232770 - 3232881
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| ||||| | ||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  3232770 gggtgatttagggtcaattttgatcaaaaaatcacccctccgaattgtttttccttctatcctaattgaataaatgatttcacatattttctgttttctt 3232869  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  3232870 tcgtttgttttt 3232881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 20411555 - 20411666
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    ||||||||||||||||| ||||||||||||||||||| ||| | ||||||||| || ||| | |||||||||||||||||||||||||||||||||||||    
T  20411555 gggtgatttatggtcaattttgacccaaaaatcacccatccgaattgtttttctttttattcaaattgaataagtgatttcacatattttctgttttctt 20411654  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  20411655 tcgtttgttttt 20411666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 33487173 - 33487058
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||||| ||||||| || ||    
T  33487173 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaatatgtgatttcatatattttatgctt 33487074  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  33487073 tctttcgtttgttttt 33487058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 14265266 - 14265377
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| ||||||  ||||||||||||||| |  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  14265266 gggtgatttagggtcaattttgacaaaaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgatttcacatattttctgttttctt 14265365  T
Q  558 acgtttgttttt 569  Q
    |||| |||||||    
T  14265366 acgtatgttttt 14265377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 18343592 - 18343707
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| | |||| ||||||||||||||||||||| | ||||||||||| ||||| | ||||| ||| ||||||||||||||||||||||||    
T  18343592 agaggggtgatttaggatcaattttgacccaaaaatcaccccttcgatttgtttttccttctaccttaattaaatgagtgatttcacatattttctgttt 18343691  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  18343692 tctttcgtttgttttt 18343707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 28678273 - 28678158
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||| | ||| | ||||||||| ||||||| |||||||||||||||||||||||||||| | |||    
T  28678273 agaggggtgatttagggtcaattttgacccaaaaatcactcgtccgaattgtttttcgttctatcataattgaataagtgatttcacatattttatattt 28678174  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  28678173 tctttcgtttgttttt 28678158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 42490871 - 42490986
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||| ||||||||| |||||| ||||||| ||||||||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||    
T  42490871 agagaggtgatttagggtcaagtttgacctaaaaatcacccctccgaattgtttttcgttctatcttaattgaataagtgatttcacatatcttcagttt 42490970  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  42490971 tctttcgtttgttttt 42490986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 29205267 - 29205378
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| |||||||||||||||||||||   | ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||    
T  29205267 gggtgatttagggtcaattttgacccaaaaatcaccccttggaattgtttttccttctatcataattgaataagtgatttcatatattttctgttttctt 29205366  T
Q  558 acgtttgttttt 569  Q
      ||||||||||    
T  29205367 ttgtttgttttt 29205378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 13488675 - 13488564
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||| | ||||||||||||||||||| ||| ||||||||||| ||| | | |||||||||||||||||| ||||||||||| |||||||    
T  13488675 gggtgatttagggtcgattttgacccaaaaatcacccatccgatttgtttttccttccaccttaattgaataagtgattttacatattttctattttctt 13488576  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  13488575 tcgtttgttttt 13488564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 45750456 - 45750571
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||||||||||||| |  ||| |||  |||||| || |||||||||||||||||| ||||||||||||||  ||||    
T  45750456 agaggggtgatttaaggtcaattttgacccaaaaatcatcaatccgattgttttttccttttatcctaattgaataagttatttcacatatttttggttt 45750555  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  45750556 tctttcgtttgttttt 45750571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 569
Target Start/End: Complemental strand, 37822471 - 37822373
Alignment:
Q  471 tcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||| |||||||||||||| |||| ||  | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||    
T  37822471 tcaattttgacccaaaaattacccttctgaattgtttttccttctatcctaattgaataagtgatttcacatattttctattttctttcatttgttttt 37822373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 484 - 569
Target Start/End: Original strand, 10627008 - 10627093
Alignment:
Q  484 aaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||| |||||| | ||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  10627008 aaaaatcatccctccgagttgtttttctttatatcctaattgaataagtaatttcacatattttctgttttctttcgtttgttttt 10627093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 45193769 - 45193654
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt-cattctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    ||||||| |||||| |||||| ||| |||||| ||| |||||||| | |||||||| | ||||||||||||||||||||||||||||||||||||| |||    
T  45193769 agaggggcgatttagggtcaattttaacccaataat-acccctccgagttgttttttccttctatcctaattgaataagtgatttcacatattttccgtt 45193671  T
Q  553 ttcttacgtttgttttt 569  Q
    | ||| |||||||||||    
T  45193670 tcctttcgtttgttttt 45193654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 486 - 569
Target Start/End: Original strand, 44517157 - 44517240
Alignment:
Q  486 aaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||| ||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  44517157 aaatcacccttccgaattgtttttccttctatcctaattcaataagtgatttcacatattttctgctttctttcgtttgttttt 44517240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 4871165 - 4871054
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| | |||| |||||| || |||||||| |||| | ||||||||| || ||| |||||||||||||| |||||||||||||||| |||| ||    
T  4871165 gggtgatttaagatcaattttgactcataaatcaccactccgaattgtttttccttttattctaattgaataagttatttcacatattttctattttttt 4871066  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  4871065 ccgtttgttttt 4871054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 569
Target Start/End: Original strand, 51418040 - 51418106
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  51418040 ttgtttttccttctatcctaattgaa-aagtgatttcacatattttctgttttctttcgtttgttttt 51418106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 503 - 569
Target Start/End: Complemental strand, 29726690 - 29726624
Alignment:
Q  503 tgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  29726690 tgtttttccttatatcctaatcgaataagtgatttcacatattttctgttttctttcgtttgttttt 29726624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 454 - 564
Target Start/End: Original strand, 42276335 - 42276444
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| ||| |  |||||| ||||| |||||||||| | ||||||||  ||||||| ||||| ||||| ||||||||||||||||| ||||    
T  42276335 agaggggtgatttagggttatttttgacacaaaa-tcacccctccgaattgttttttcttctatcataattaaataactgatttcacatattttcagttt 42276433  T
Q  554 tcttacgtttg 564  Q
    |||| ||||||    
T  42276434 tctttcgtttg 42276444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 461 - 557
Target Start/End: Original strand, 17347584 - 17347679
Alignment:
Q  461 tgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    ||||||| |||||| ||||||| ||||||||||| ||| | ||||||||  ||||||| |||  |||||||||||||||||| ||||||||||||||    
T  17347584 tgatttagggtcaattttgacc-aaaaatcacccatccgagttgttttttcttctatcataaaggaataagtgatttcacatcttttctgttttctt 17347679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 15391329 - 15391280
Alignment:
Q  520 taattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  15391329 taattgaataagtgatttcacatgttttctgttttctttcgtttgttttt 15391280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 517
Target Start/End: Complemental strand, 33939145 - 33939082
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctat 517  Q
    |||||||||||||| |||||| ||||||||||||||||||||||  | ||||||||| ||||||    
T  33939145 agaggggtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttttctttctat 33939082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 570
Target Start/End: Original strand, 32878690 - 32878799
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| ||| || |||||||||||| ||| || ||| | |||||||||  |||||||||||| |||||||| ||||||||| ||||  |||||||    
T  32878690 gggtgatttagggttaattttgacccaaaa-tcatccttccgagttgtttttccctctatcctaattaaataagtg-tttcacata-tttcaattttctt 32878786  T
Q  558 acgtttgtttttt 570  Q
     ||||||||||||    
T  32878787 tcgtttgtttttt 32878799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 569
Target Start/End: Complemental strand, 15791344 - 15791303
Alignment:
Q  528 taagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  15791344 taagtgatttaacatattttctgttttctttcgtttgttttt 15791303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 569
Target Start/End: Complemental strand, 28399414 - 28399349
Alignment:
Q  505 tttttcattctatcctaattgaataagtgattt-cacatattttctgttttcttacgtttgttttt 569  Q
    |||||| || |||| ||||| |||||||||||| ||||||||||  |||||||| |||||||||||    
T  28399414 tttttccttatatcataattaaataagtgattttcacatatttttagttttctttcgtttgttttt 28399349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 531
Target Start/End: Complemental strand, 15791630 - 15791554
Alignment:
Q  455 gaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataag 531  Q
    ||||| ||||||| | |||| |||||| |||||||||| | ||| | ||||||||| || |||| ||||||||||||    
T  15791630 gagggctgatttaggatcaattttgacacaaaaatcactcatccgagttgtttttccttatatcttaattgaataag 15791554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 6115 - 6230
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6115 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttcacatattttctgttt 6214  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  6215 tctttcgtttgttttt 6230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 17331306 - 17331421
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  17331306 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctatcttaattgaataagtgatttcacatattttctgttt 17331405  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  17331406 tctttcgtttgttttt 17331421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 28040607 - 28040722
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | | ||||||| || |||||||||||||||||||||||||||||||||||||||    
T  28040607 agaggggtgatttacggtcaattttgacccaaaaatcacccctccaaatcgtttttccttatatcctaattgaataagtgatttcacatattttctgttt 28040706  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  28040707 tctttcgtttgttttt 28040722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 460 - 569
Target Start/End: Original strand, 17699537 - 17699646
Alignment:
Q  460 gtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttac 559  Q
    |||||||| |||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |    
T  17699537 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttcacatcttttctgttttctttc 17699636  T
Q  560 gtttgttttt 569  Q
    ||||||||||    
T  17699637 gtttgttttt 17699646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 32347858 - 32347742
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt-cattctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  32347858 agaggggtgatttagggtcaactttgacccaaaaatcacccctccgacttgttttttccttctatcctaattgaataagtgatttcacatattttctgtt 32347759  T
Q  553 ttcttacgtttgttttt 569  Q
    || || |||||||||||    
T  32347758 ttatttcgtttgttttt 32347742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 27241046 - 27241157
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||||| |||| ||||||||||||||||||||||  | ||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  27241046 gggtgatttatgatcaattttgacccaaaaatcacccctctgaattgtttttccttttatcctaattgaataagtgatttcacatattttctgttttctt 27241145  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  27241146 tcgtttgttttt 27241157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 33164611 - 33164496
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||| | ||||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  33164611 agaggggtgatttatggtcaattttgactcaaaaatcactcctccgaattgtttttccttctaccttaattgaataagtgatttcacatattttctgttt 33164512  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  33164511 tctttcgtttgttttt 33164496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 456 - 569
Target Start/End: Original strand, 29097769 - 29097882
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||    
T  29097769 aggggtgatttagggtcaattttgacccaaagatcacccctccgatttgtttttccttctaccttaattgaataagtgatttcacatattttctgttttc 29097868  T
Q  556 ttacgtttgttttt 569  Q
    ||  ||||||||||    
T  29097869 tttagtttgttttt 29097882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 6281022 - 6281137
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  | || |||||| |||||| ||||||||||||||||||| ||||||||||| |||    
T  6281022 agaggggtgatttatggtcaattttgacccaaaaatcacccctctgaattatttttccttctattctaattgaataagtgattttacatattttctattt 6281121  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  6281122 tctttcgtttgttttt 6281137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 43493850 - 43493965
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||| |||||||||||| |||| | ||||||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  43493850 agaggggtgatttagggtcaattttgatccaaaaatcacctctccgaattgtttttccttctattctaattgaataagtgatttcacatattttttgttt 43493949  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  43493950 tctttcgtttgttttt 43493965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 17096385 - 17096267
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt---cattctatcctaattgaataagtgatttcacatattttctg 550  Q
    |||||||||||||| |||||| |||||||||| |||||||||||| | ||||||||   | |||||||||||||||||||||||||||||||||||||||    
T  17096385 agaggggtgatttagggtcaattttgacccaataatcacccctcccagttgttttttttccttctatcctaattgaataagtgatttcacatattttctg 17096286  T
Q  551 ttttcttacgtttgttttt 569  Q
    ||| ||| |||||||||||    
T  17096285 tttcctttcgtttgttttt 17096267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 459 - 569
Target Start/End: Complemental strand, 178244 - 178134
Alignment:
Q  459 ggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctta 558  Q
    ||||||||| |||||| |||||| ||||||||||| |||| | |||| |||| || ||||||||||||||||||||||||||||||||| |||||||||     
T  178244 ggtgatttaaggtcaattttgactcaaaaatcacctctccgagttgtgtttccttatatcctaattgaataagtgatttcacatattttatgttttcttt 178145  T
Q  559 cgtttgttttt 569  Q
    |||||||||||    
T  178144 cgtttgttttt 178134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 6635227 - 6635343
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcaccc-ctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    |||||| ||||||| || ||| ||||||||||||||||||| |||  | ||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  6635227 agagggatgatttagggccaattttgacccaaaaatcaccctctctgagttgtttttccttctatcataattgaataagtgatttcacatattttctgtt 6635326  T
Q  553 ttcttacgtttgttttt 569  Q
    |||||  ||||||||||    
T  6635327 ttctttagtttgttttt 6635343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 459 - 569
Target Start/End: Original strand, 42609127 - 42609237
Alignment:
Q  459 ggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctta 558  Q
    ||||||||| |||||| ||||||| ||||||||| | ||| | ||||||||  |||||||||||||||||||||||||||||||||||||| |||||||     
T  42609127 ggtgatttagggtcaattttgacctaaaaatcactcatccgaattgttttttcttctatcctaattgaataagtgatttcacatattttctattttcttt 42609226  T
Q  559 cgtttgttttt 569  Q
     ||||||||||    
T  42609227 tgtttgttttt 42609237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 454 - 574
Target Start/End: Complemental strand, 26295201 - 26295081
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||| ||||||||| |||||| ||||| ||||||||||||||||| |  |||||||| ||||||||| |||||||||||||||| ||| ||||||| |||    
T  26295201 agagaggtgatttagggtcaattttgatccaaaaatcacccctccgaagtgtttttccttctatccttattgaataagtgatttaacaaattttctattt 26295102  T
Q  554 tcttacgtttgttttttgtga 574  Q
    |||| | ||||||||| ||||    
T  26295101 tctttcttttgtttttagtga 26295081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 461 - 569
Target Start/End: Original strand, 34431045 - 34431153
Alignment:
Q  461 tgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacg 560  Q
    ||||||| |||||| ||||||||||||||||||| | | | ||||||||  ||||||  |||||||||||||||||||||||||||||||||||||| ||    
T  34431045 tgatttagggtcaattttgacccaaaaatcacccattcgaattgttttttcttctattttaattgaataagtgatttcacatattttctgttttctttcg 34431144  T
Q  561 tttgttttt 569  Q
    |||| ||||    
T  34431145 tttgatttt 34431153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 486 - 569
Target Start/End: Complemental strand, 39179939 - 39179856
Alignment:
Q  486 aaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||||||| | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39179939 aaatcacccctccgaattatttttccttctattctaattgaataagtgatttcacatattttctgttttctttcgtttgttttt 39179856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 569
Target Start/End: Complemental strand, 12439771 - 12439662
Alignment:
Q  459 ggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctta 558  Q
    ||||||||| ||  || ||||||| ||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||     
T  12439771 ggtgatttagggataattttgacctaaaaatcaccc-tccgaattgtttttcattctatcctagttgaataagtgatttcatatattttttgttttcttt 12439673  T
Q  559 cgtttgttttt 569  Q
    |||||||||||    
T  12439672 cgtttgttttt 12439662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 454 - 567
Target Start/End: Original strand, 3740336 - 3740448
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||| |||||||| ||| || |||||| ||||||||| || ||  | ||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  3740336 agaggtgtgatttagggttaattttgactcaaaaatcatccatctgaattgttttcc-ttctatcctaattgaataagtgatttcacatattttctgttt 3740434  T
Q  554 tcttacgtttgttt 567  Q
    |||| |||||||||    
T  3740435 tctttcgtttgttt 3740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 455 - 569
Target Start/End: Original strand, 20483165 - 20483279
Alignment:
Q  455 gaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaatt-gaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||| | |||| ||||||||||||||||||| ||| | ||||||||| || ||| |||||| |||||||||||||||||||||||||||||    
T  20483165 gaggggtgatttaggatcaattttgacccaaaaatcaccc-tccaaattgtttttccttttattctaatttgaataagtgatttcacatattttctgttt 20483263  T
Q  554 tcttacgtttgttttt 569  Q
    | ||  ||||||||||    
T  20483264 tgttttgtttgttttt 20483279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 12891706 - 12891769
Alignment:
Q  506 ttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12891706 ttttccttttatcctaattgaataagtgatttcacatattttctgttttctttcgtttgttttt 12891769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 23882259 - 23882144
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||  ||||||||| |  ||| | ||||||||| |||||||| ||||||||||||||||| ||||||||| | |||    
T  23882259 agaggggtgatttagggtcaattttgattcaaaaatcatcaatccaaattgtttttctttctatccaaattgaataagtgatttgacatattttatattt 23882160  T
Q  554 tcttacgtttgttttt 569  Q
    |||  |||||||||||    
T  23882159 tctatcgtttgttttt 23882144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 39531540 - 39531432
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| |||||||||||| ||| |||||| | ||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||    
T  39531540 gggtgatttaaggtcaattttgacccaaaa-tcatccctccgagttgttttcc-ttctatcgtaattgaataagtgatttcacata-tttctgttttctt 39531444  T
Q  558 acgtttgttttt 569  Q
      ||||||||||    
T  39531443 ttgtttgttttt 39531432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 3079413 - 3079333
Alignment:
Q  489 tcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||| ||||||||||| || |||| |||||||||||||||||| |||||||||||| ||| || |||||||||||    
T  3079413 tcacccctccgatttgtttttccttatatcataattgaataagtgatttaacatattttctgctttttttcgtttgttttt 3079333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 458 - 546
Target Start/End: Complemental strand, 981164 - 981076
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattt 546  Q
    |||||||||| | |||| |||||||||| |||| ||||||| | ||||||||| ||||||| ||||||||  |||||||||||||||||    
T  981164 gggtgatttaggatcaattttgacccaataatcgcccctccgagttgtttttccttctatcataattgaacgagtgatttcacatattt 981076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 569
Target Start/End: Original strand, 17687214 - 17687298
Alignment:
Q  485 aaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||  ||| | ||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||  ||||||||||    
T  17687214 aaaatcaccaatccgagttgtttttccttctatcttaattgaataagttatttcacatattttcagttttcttttgtttgttttt 17687298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 6682013 - 6681923
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttc 548  Q
    ||||||||||  |||||||||| |||||||||||| | | | | ||||||||| || ||||  ||||||||||||||||||||||||||||    
T  6682013 gggtgatttagagtcaaatttggcccaaaaatcactcattcgagttgtttttccttttatctgaattgaataagtgatttcacatattttc 6681923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 7771949 - 7771888
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattct 515  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||| ||||    
T  7771949 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttct 7771888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 469 - 569
Target Start/End: Complemental strand, 42396640 - 42396540
Alignment:
Q  469 ggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgtttt 568  Q
    |||||| |||||||||||||||| |  | | | || |||||  ||||||| |||||||||||| ||||||||||||||| ||||||||| | ||||||||    
T  42396640 ggtcaattttgacccaaaaatcatcttttcgaattattttttcttctatcttaattgaataagcgatttcacatattttttgttttctttcatttgtttt 42396541  T
Q  569 t 569  Q
    |    
T  42396540 t 42396540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 569
Target Start/End: Original strand, 18653808 - 18653875
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||  || ||||||||||||||||||||||||  |||||||||| |||||| |||||||||||    
T  18653808 ttgttttttcttatatcctaattgaataagtgatttcgtatattttctgatttctttcgtttgttttt 18653875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 569
Target Start/End: Complemental strand, 2555419 - 2555378
Alignment:
Q  528 taagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||||||||| |||| ||||||||| |||||||||||    
T  2555419 taagtgatttcacattttttttgttttctttcgtttgttttt 2555378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 456 - 569
Target Start/End: Original strand, 41361712 - 41361825
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||    
T  41361712 aggggtgatttatggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccgtaattgaataagtgatttcacatattttctgttttc 41361811  T
Q  556 ttacgtttgttttt 569  Q
    || |||||||||||    
T  41361812 tttcgtttgttttt 41361825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 1810370 - 1810256
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||||| ||||||| ||    
T  1810370 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgatttttttttc-ttctatcctaattcaataagtgatttcacattttttctgatt 1810272  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  1810271 tctttcgtttgttttt 1810256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 10338969 - 10338858
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| |||||| |||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  10338969 gggtgatttaaggtcaattttgacgcaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgatttcacatattttttgttttctt 10338870  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  10338869 tcgtttgttttt 10338858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 24791319 - 24791204
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||||||||| |||||||||||||||| || ||| | ||||||||| || |||||||||| |||||||||||| |||||||||||||||    
T  24791319 agaggggtgatttatggtcaattttgacccaaaaatcatccatccgaattgtttttccttatatcctaattcaataagtgatttaacatattttctgttt 24791220  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  24791219 tctttcgtttgttttt 24791204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 30027031 - 30026916
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||  ||||||||||||||||||| ||| | ||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  30027031 agaggggtgatttagggtcatttttgacccaaaaatcacccatccgagttgttttttcttctatcataattgaataagtgatttcacatattttctgttt 30026932  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  30026931 tctttcgtttgttttt 30026916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 37612631 - 37612746
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | || |||||| |||||||||| ||||||||||||||||||||||||| | |||    
T  37612631 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattttttttccttctatcctagttgaataagtgatttcacatattttttattt 37612730  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  37612731 tctttcgtttgttttt 37612746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 39067840 - 39067725
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||||||||||||||   ||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  39067840 agaggggtgatttaaggtcaattttgacccaaaaatcactgttccaaattgtttttccttctatcctaatttaataagtgatttcacatattttctgttt 39067741  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  39067740 tctttcgtttgttttt 39067725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 10147924 - 10148040
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttca-ttctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    |||||||||||||| |||||| |||||||||| |||||||||||| | ||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  10147924 agaggggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttcttctatcctaattgaataagtgatttcacatattttctgtt 10148023  T
Q  553 ttcttacgtttgttttt 569  Q
    | ||| |||||||||||    
T  10148024 tcctttcgtttgttttt 10148040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 14600849 - 14600734
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||| ||||||||| |||||| |||||||||||||||| || ||| | ||||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  14600849 agagaggtgatttagggtcaattttgacccaaaaatcatccatccgagttgttttttcttctatcctaattgaataactgatttcacatattttctgttt 14600750  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  14600749 tctttcgtttgttttt 14600734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 2025360 - 2025245
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||||||||| ||||||| ||||||||||| ||| | ||||||||| || ||| |||||||||||||||||||||||| ||||||||||    
T  2025360 agaggggtgatttatggtcaattttgaccaaaaaatcacccttccaagttgtttttccttttattctaattgaataagtgatttcacatgttttctgttt 2025261  T
Q  554 tcttacgtttgttttt 569  Q
    | || ||||| |||||    
T  2025260 tatttcgtttattttt 2025245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 459 - 569
Target Start/End: Original strand, 9501572 - 9501683
Alignment:
Q  459 ggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt-cattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    ||||||||| |||||| ||||| ||||||||||||| ||  | |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9501572 ggtgatttagggtcaattttgatccaaaaatcacccatctgaattgttttttccttctatcctaattgaataagtgatttcacatattttctgttttctt 9501671  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  9501672 tcgtttgttttt 9501683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 11161860 - 11161975
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||| ||||| |||||| ||||||||||||||||||||| | | ||||||||| || |||||||||||||||||| ||||||||| ||||| ||||    
T  11161860 agaggggtaatttagggtcaattttgacccaaaaatcaccccttcaagttgtttttctttatatcctaattgaataagtcatttcacatcttttcagttt 11161959  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  11161960 tctttcgtttgttttt 11161975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 31202440 - 31202551
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| |||||||||||||||| || ||| | ||||||||| ||||||  ||||||||||||||||||||||||||||||||||| ||    
T  31202440 gggtgatttaaggtcaattttgacccaaaaatcatccatccaaattgtttttctttctattataattgaataagtgatttcacatattttctgttttgtt 31202539  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  31202540 tcgtttgttttt 31202551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 31407899 - 31407784
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||||||||||||| | |||| | ||||||||| ||||||| || |||||||| |||||||||||||||| |||||    
T  31407899 agaggggtgatttagggtcaattttgacccaaaaatcatctctccgaattgtttttccttctatcatagttgaataaatgatttcacatattttttgttt 31407800  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  31407799 tctttcgtttgttttt 31407784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 2234617 - 2234506
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    ||||||| || ||| || ||||| ||||||||||||||| | | ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||    
T  2234617 gggtgatctagggttaattttgatccaaaaatcaccccttcgaattgtttttccttctatcctagttgaataagtgatttcacatattttttgttttctt 2234518  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  2234517 tcgtttgttttt 2234506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 458 - 575
Target Start/End: Original strand, 12329608 - 12329725
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    ||||||||||  ||||| ||||| ||||||||||||  | | | ||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  12329608 gggtgatttagagtcaattttgatccaaaaatcaccatttcgaattgtttttccttttatcctaattgaataagtgatttcacatattttctgttttctt 12329707  T
Q  558 acgtttgttttttgtgat 575  Q
     |||||  ||||||||||    
T  12329708 tcgttttgtttttgtgat 12329725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 13570877 - 13570762
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||  ||||| ||||| | ||||||||  | ||| | ||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  13570877 agaggggtgatttagagtcaattttgatctaaaaatcattcatcccaattgtttttcattctatcctaattaaataagtgatttcacatattttctattt 13570778  T
Q  554 tcttacgtttgttttt 569  Q
    | || |||||||||||    
T  13570777 tttttcgtttgttttt 13570762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 31308120 - 31308241
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatt------tgtttttcattctatcctaattgaataagtgatttcacatatttt 547  Q
    |||||||||||||| |||||| ||||| | |||||||||| |||| | |      |||||||| ||||||||||||||||||||||||||||||||||||    
T  31308120 agaggggtgatttaaggtcaattttgatctaaaaatcacctctccgactccgagttgtttttccttctatcctaattgaataagtgatttcacatatttt 31308219  T
Q  548 ctgttttcttacgtttgttttt 569  Q
     ||||||||| |||||||||||    
T  31308220 atgttttctttcgtttgttttt 31308241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 454 - 567
Target Start/End: Complemental strand, 23971245 - 23971132
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||| |||||||||  || || ||||||| ||||||||| | ||| | ||||||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  23971245 agagaggtgatttaaagtaaattttgaccaaaaaatcactcatccgagttgtttttccttctattctaattgaataagtgatttcacatattttatgttt 23971146  T
Q  554 tcttacgtttgttt 567  Q
    |||| |||||||||    
T  23971145 tctttcgtttgttt 23971132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 461 - 568
Target Start/End: Complemental strand, 1040037 - 1039930
Alignment:
Q  461 tgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacg 560  Q
    ||||||| |||||| ||||| ||||||||||||| ||| | ||| ||||| |||||| |||||| ||||||||||||||||||||||||| |||||| |     
T  1040037 tgatttaaggtcaattttgatccaaaaatcacccatccgaattggttttccttctattctaattcaataagtgatttcacatattttctgctttctttca 1039938  T
Q  561 tttgtttt 568  Q
    ||||||||    
T  1039937 tttgtttt 1039930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 477 - 569
Target Start/End: Complemental strand, 15288926 - 15288834
Alignment:
Q  477 ttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||| ||||||||| |||| | | ||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||| |||||||||||    
T  15288926 ttgactcaaaaatcatcccttcgaattgtttttctttctatcctaattaaatacgtgatttcacttattttctgttttctttcgtttgttttt 15288834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 477 - 569
Target Start/End: Complemental strand, 15469295 - 15469203
Alignment:
Q  477 ttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||| ||||||||| |||| | | ||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||| |||||||||||    
T  15469295 ttgactcaaaaatcatcccttcgaattgtttttctttctatcctaattaaatacgtgatttcacttattttctgttttctttcgtttgttttt 15469203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 37128589 - 37128522
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  37128589 ttgtttttccttctatcctagttgaataagtgatttcacatattttttgttttctttcgtttgttttt 37128522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 461 - 567
Target Start/End: Complemental strand, 3204899 - 3204794
Alignment:
Q  461 tgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacg 560  Q
    |||||||  ||||| |||||||||||||| |||| ||| | |||||||||  ||||| |||||| ||| |||||||||||||||||||||||||||| ||    
T  3204899 tgatttagagtcaattttgacccaaaaattaccc-tccgaattgtttttccatctattctaatttaatgagtgatttcacatattttctgttttctttcg 3204801  T
Q  561 tttgttt 567  Q
    |||||||    
T  3204800 tttgttt 3204794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 458 - 557
Target Start/End: Original strand, 24699812 - 24699913
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcat--tctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||| |||||| ||||||||||||||||||| ||| |  |||||||  |  | |||||||||| ||||||||||||||||||||||||||||||    
T  24699812 gggtgatttagggtcaattttgacccaaaaatcacccatccgagatgttttttttcttatatcctaattaaataagtgatttcacatattttctgttttc 24699911  T
Q  556 tt 557  Q
    ||    
T  24699912 tt 24699913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 515 - 569
Target Start/End: Complemental strand, 7579945 - 7579891
Alignment:
Q  515 tatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7579945 tatcttaattgaataagtgatttcacatattttctgttttctttcgtttgttttt 7579891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 512 - 569
Target Start/End: Original strand, 22787528 - 22787585
Alignment:
Q  512 ttctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  22787528 ttctatcctagttgaataagtgatttaacatattttctgttttctttcgtttgttttt 22787585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 569
Target Start/End: Original strand, 2968513 - 2968625
Alignment:
Q  460 gtgatttatggtcaaatttgacccaaaaatcacccctcct---atttgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttc 555  Q
    ||||||||||||||| |||||| ||||| ||||| |||||   | ||||||||| || ||| |||||| |||||||||||| ||||||||||  ||||||    
T  2968513 gtgatttatggtcaattttgactcaaaa-tcacctctcctccgagttgtttttctttatattctaattaaataagtgattttcacatatttttagttttc 2968611  T
Q  556 ttacgtttgttttt 569  Q
    || |||||||||||    
T  2968612 tttcgtttgttttt 2968625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 4757191 - 4757246
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    ||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  4757191 ttgtttttccttctatcataattaaataaatgatttcacatattttctgttttctt 4757246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 547
Target Start/End: Complemental strand, 30039476 - 30039389
Alignment:
Q  460 gtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgattt-cacatatttt 547  Q
    ||||||||||||||| |||||||| |||||||| | ||| | ||||||||| |||| | ||||||||||| ||||||| ||||||||||    
T  30039476 gtgatttatggtcaattttgaccc-aaaatcactcatccgaattgtttttccttcttttctaattgaatatgtgatttccacatatttt 30039389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 547
Target Start/End: Original strand, 10334159 - 10334245
Alignment:
Q  461 tgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatatttt 547  Q
    ||||||| |||||| ||||| ||||||||||| | |   | ||||||||| ||||||||||||| ||||||||| |||| |||||||    
T  10334159 tgatttagggtcaattttgatccaaaaatcactcatatgagttgtttttccttctatcctaattaaataagtgagttcatatatttt 10334245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 510
Target Start/End: Complemental strand, 7583915 - 7583859
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttc 510  Q
    |||||||||||||| | |||| ||||||||||||||||||| ||| | |||||||||    
T  7583915 agaggggtgatttaggatcaattttgacccaaaaatcacccatccgagttgtttttc 7583859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 569
Target Start/End: Complemental strand, 32779069 - 32778986
Alignment:
Q  487 aatcacccctcctatttgtttttcattctatcctaattgaataagtgatttc-acatattttctgttttcttacgtttgttttt 569  Q
    |||||||||| | | ||||||||| || |||| ||||| |||||| |||||| |||||||||| |||||||| ||||| |||||    
T  32779069 aatcaccccttcgagttgtttttccttatatcataattaaataagagatttccacatattttcagttttctttcgtttattttt 32778986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 524
Target Start/End: Complemental strand, 13576326 - 13576257
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaatt 524  Q
    |||||||||||||| | |||| ||||||| |||| ||| |||||| | ||||||||| |||||||||||||    
T  13576326 agaggggtgatttaggatcaattttgacctaaaa-tcatccctccgagttgtttttctttctatcctaatt 13576257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 544
Target Start/End: Complemental strand, 28297230 - 28297169
Alignment:
Q  483 caaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatat 544  Q
    ||||||||||| |||| | ||||||||| |||| | |||||||||| |||||||||| ||||    
T  28297230 caaaaatcaccgctccgagttgtttttccttcttttctaattgaattagtgatttcatatat 28297169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 42603912 - 42603797
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||| |||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42603912 agagcggtgatttatggtcaattttgactcaaaaatcacccctccgaattgtttttcattctatcataattgaataagtgatttcacatattttctgttt 42603813  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  42603812 tctttcgtttgttttt 42603797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 28665051 - 28664940
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| |||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28665051 gggtgatttagggtcaattttgaccctaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttcacatattttctgttttctt 28664952  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  28664951 tcgtttgttttt 28664940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 456 - 569
Target Start/End: Original strand, 5684345 - 5684458
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| |||||| |||||| ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5684345 aggggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 5684444  T
Q  556 ttacgtttgttttt 569  Q
    || |||||| ||||    
T  5684445 tttcgtttgctttt 5684458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 456 - 569
Target Start/End: Original strand, 5709395 - 5709508
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| |||||| |||||| ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5709395 aggggtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 5709494  T
Q  556 ttacgtttgttttt 569  Q
    || |||||| ||||    
T  5709495 tttcgtttgctttt 5709508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 11832996 - 11833112
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccc-tcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    |||||| |||||||||||||| |||||||||||||||||||| ||| | ||||||||| |||| |||||||||||||||||||||||||||||||||||     
T  11832996 agagggatgatttatggtcaattttgacccaaaaatcaccccctccgaattgtttttccttctttcctaattgaataagtgatttcacatattttctgta 11833095  T
Q  553 ttcttacgtttgttttt 569  Q
    ||||| |||||||||||    
T  11833096 ttctttcgtttgttttt 11833112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 454 - 568
Target Start/End: Complemental strand, 45457699 - 45457585
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||| |||||||||| ||||| | ||||||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  45457699 agaggggtgatttagggtcaattttgacgcaaaaatcactcctccgaattgtttttccttctatcttaattgaataagtgatttcacatattttatgttt 45457600  T
Q  554 tcttacgtttgtttt 568  Q
    |||| ||||||||||    
T  45457599 tctttcgtttgtttt 45457585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 457 - 569
Target Start/End: Complemental strand, 17473863 - 17473751
Alignment:
Q  457 ggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttct 556  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||    
T  17473863 ggggtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgatttcacatattttctgtttcct 17473764  T
Q  557 tacgtttgttttt 569  Q
    | | |||||||||    
T  17473763 ttcatttgttttt 17473751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 457 - 569
Target Start/End: Original strand, 17579351 - 17579463
Alignment:
Q  457 ggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttct 556  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||    
T  17579351 ggggtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgatttcacatattttctgtttcct 17579450  T
Q  557 tacgtttgttttt 569  Q
    | | |||||||||    
T  17579451 ttcatttgttttt 17579463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 46026172 - 46026057
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||| | ||| | ||||||||| ||||||||||||||||||||| |||| ||||||||| |||||    
T  46026172 agaggggtgatttagggtcaattttgacccaaaaatcacacatccgaattgtttttccttctatcctaattgaataagttatttaacatattttttgttt 46026073  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  46026072 tctttcgtttgttttt 46026057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 456 - 557
Target Start/End: Original strand, 9785297 - 9785398
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| |||||| ||||||||||||||||||||| | | ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||    
T  9785297 aggggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcttaattgaataagtgatttcacatattttttgttttc 9785396  T
Q  556 tt 557  Q
    ||    
T  9785397 tt 9785398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 21990639 - 21990755
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt-cattctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    |||||||||||||| |||||| ||||||  ||||||||||||||| | |||||||| | | ||||||||||||||||||||||||||||||| |||||||    
T  21990639 agaggggtgatttagggtcaattttgactgaaaaatcacccctccgaattgttttttcctgctatcctaattgaataagtgatttcacatatattctgtt 21990738  T
Q  553 ttcttacgtttgttttt 569  Q
    ||||| |||||||||||    
T  21990739 ttctttcgtttgttttt 21990755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 454 - 570
Target Start/End: Complemental strand, 48304538 - 48304422
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||| ||| | ||| ||||| | |||||||||||||||||||||||||| | |||||||||||    
T  48304538 agaggggtgatttagggtcaattttgacccaaaaatcacccatccgaattgcttttcctgctatcctaattgaataagtgatttcatagattttctgttt 48304439  T
Q  554 tcttacgtttgtttttt 570  Q
    ||||  |||||||||||    
T  48304438 tctttagtttgtttttt 48304422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 1281276 - 1281165
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||| | ||||||| ||||||||||| ||| | |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||    
T  1281276 gggtgatttagggtccattttgaccaaaaaatcacccatccgaattgtttttcattatattctaattgaataagtgatttcacatattttttgttttctt 1281177  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  1281176 tcgtttgttttt 1281165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 10574363 - 10574474
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| |||||| |||||||||||||||| | ||||||||| || ||||||||||||||||  ||||| |||||||||||||||||||    
T  10574363 gggtgatttagggtcaattttgactcaaaaatcacccctccgaattgtttttccttttatcctaattgaataaacgattttacatattttctgttttctt 10574462  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  10574463 tcgtttgttttt 10574474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 21603441 - 21603555
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||| ||||| ||||||||  | ||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  21603441 agaggggtgatttagggtcaattttgacc-aaaaagcacccctctgaattgtttttccttctatcctaattgaataagtgatttcacatattctctgttt 21603539  T
Q  554 tcttacgtttgttttt 569  Q
    |||| | |||||||||    
T  21603540 tctttcctttgttttt 21603555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 36579455 - 36579340
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||| ||||||| |||||| |||||||| |||||||||||||| | ||||||||| |||||||||| |||||||||||||| |||||||||| |||||    
T  36579455 agagggatgatttagggtcaattttgacccgaaaatcacccctccgaattgtttttccttctatcctagttgaataagtgattccacatattttttgttt 36579356  T
Q  554 tcttacgtttgttttt 569  Q
    ||||  ||||||||||    
T  36579355 tcttttgtttgttttt 36579340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 458 - 568
Target Start/End: Complemental strand, 39533114 - 39533004
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| |||||||||||||||| | |||  | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  39533114 gggtgatttagggtcaattttgacccaaaaatcatctctctgaattgtttttccttctatcttaattgaataagtgatttcacatattttctgttttctt 39533015  T
Q  558 acgtttgtttt 568  Q
      |||||||||    
T  39533014 ttgtttgtttt 39533004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 456 - 557
Target Start/End: Complemental strand, 22747648 - 22747548
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| |||||| ||||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||| ||||||||| |||||||    
T  22747648 aggggtgatttagggtcaattttgacccaaaaatcacccctccaagttgttttcc-ttctatcctaattgaataagtgatttgacatattttatgttttc 22747550  T
Q  556 tt 557  Q
    ||    
T  22747549 tt 22747548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 42644654 - 42644769
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| | |||| |||||| |||||||||| | |   | ||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  42644654 agaggggtgatttaggatcaattttgactcaaaaatcactcatttgaattgtttttccttctatcctaattgaataagtgatttcacatattctctgttt 42644753  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  42644754 tctttcgtttgttttt 42644769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 470 - 569
Target Start/End: Original strand, 2622586 - 2622685
Alignment:
Q  470 gtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||| ||||||||||||||||| | ||| | ||||||||| ||||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  2622586 gtcaattttgacccaaaaatcacgcatccgaattgtttttccttctatcttaattgaataagtaatttcagatattttctgttttcttgcgtttgttttt 2622685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 454 - 568
Target Start/End: Original strand, 41287935 - 41288050
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctccta-tttgtttttcattctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    |||||||||||||| |||||| |||||||||| |||||||| ||| | |   |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  41287935 agaggggtgatttagggtcaattttgacccaataatcacccatccgagtgattttttccttctatcctaattgaataggtgatttcacatattttctgtt 41288034  T
Q  553 ttcttacgtttgtttt 568  Q
    | ||| ||||||||||    
T  41288035 tcctttcgtttgtttt 41288050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 45482042 - 45482157
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||| |||||||| |||||| |||||||| |||||||||||||| |  |||||||| ||||||||||||| |||||||||||||||||||||| ||  |    
T  45482042 agaggagtgatttagggtcaattttgaccccaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgatttcacatattttatgcgt 45482141  T
Q  554 tcttacgtttgttttt 569  Q
    | || |||||||||||    
T  45482142 tgtttcgtttgttttt 45482157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 3266360 - 3266481
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt------cattctatcctaattgaataagtgatttcacatatttt 547  Q
    ||||||||||||||||||||| ||||| |||| ||||| |||||| | ||||||||      | ||||||||||||||||||||||||||||||||||||    
T  3266360 agaggggtgatttatggtcaattttgatccaataatcatccctccgagttgttttttttcttccttctatcctaattgaataagtgatttcacatatttt 3266459  T
Q  548 ctgttttcttacgtttgttttt 569  Q
    |||||| ||| ||||| |||||    
T  3266460 ctgtttcctttcgtttattttt 3266481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 6667373 - 6667474
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaa-ttgaataagtgatttcacatattttctgtt 552  Q
    ||||| |||||||| |||||| |||||||||||||||||||| || | ||||||||  |||||| |||| ||||||||||||||||||||||||||||||    
T  6667373 agaggagtgatttagggtcaattttgacccaaaaatcaccccaccgaattgttttttcttctattctaatttgaataagtgatttcacatattttctgtt 6667472  T
Q  553 tt 554  Q
    ||    
T  6667473 tt 6667474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 502 - 569
Target Start/End: Original strand, 10094467 - 10094534
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10094467 ttgtttttccttttatcctaattgaataagtgatttcacatattttctgttttctttcgtttgttttt 10094534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 15674707 - 15674640
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15674707 ttgtttttcctcctatcctaattgaataagtgatttcacatattttctgttttctttcgtttgttttt 15674640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 454 - 553
Target Start/End: Complemental strand, 17509346 - 17509248
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||| ||||||| |||||| ||||||| ||||||||||| ||| | || |||||| || |||||||||||||||||||||||||||||||||||||||    
T  17509346 agagggatgatttagggtcaattttgaccaaaaaatcaccc-tccgaattatttttccttttatcctaattgaataagtgatttcacatattttctgttt 17509248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 454 - 553
Target Start/End: Original strand, 17543868 - 17543966
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||| ||||||| |||||| ||||||| ||||||||||| ||| | || |||||| || |||||||||||||||||||||||||||||||||||||||    
T  17543868 agagggatgatttagggtcaattttgaccaaaaaatcaccc-tccgaattatttttccttttatcctaattgaataagtgatttcacatattttctgttt 17543966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 27535434 - 27535551
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcac--atattttctgt 551  Q
    |||||||||||||| |||||| ||| | ||||||||||||| ||| | ||||||||| |||||| ||||||| ||||||||||||||  |||||||||||    
T  27535434 agaggggtgatttagggtcaatttttatccaaaaatcacccatccgaattgtttttccttctattctaattgtataagtgatttcacatatattttctgt 27535533  T
Q  552 tttcttacgtttgttttt 569  Q
    ||| || | |||||||||    
T  27535534 tttatttcatttgttttt 27535551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 458 - 575
Target Start/End: Original strand, 32740734 - 32740851
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaa-atcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttct 556  Q
    ||||||||||  ||||| ||||||| |||| ||||||||  | | ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  32740734 gggtgatttagagtcaattttgaccaaaaaaatcaccccctcgaattgtttttccttctatcctaattgaataagtgatttcacatattttttgttttct 32740833  T
Q  557 tacgtttgttttttgtgat 575  Q
    | || ||| ||||||||||    
T  32740834 ttcg-ttgatttttgtgat 32740851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 489 - 568
Target Start/End: Original strand, 43847083 - 43847162
Alignment:
Q  489 tcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgtttt 568  Q
    |||||||||| | ||||||||| |  ||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  43847083 tcacccctccgaattgtttttcctcttatcctaattgaataagtgatttcacatattttctgttttccttcgtttgtttt 43847162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 463 - 569
Target Start/End: Complemental strand, 24320357 - 24320251
Alignment:
Q  463 atttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtt 562  Q
    ||||| |||||| |||||| |||||||||| | | | | ||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||||  |||    
T  24320357 atttaaggtcaattttgactcaaaaatcactcattcgagttgtttttccttctatcttaatttaataagtgatttcacatattttttgttttcttttgtt 24320258  T
Q  563 tgttttt 569  Q
    |||||||    
T  24320257 tgttttt 24320251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 21954957 - 21954846
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 556  Q
    |||||||||| |||||| ||| |||||||| |||| | ||| | ||||||||||||||||||||||| ||||| |||||| |||||||| || |||||||    
T  21954957 gggtgatttagggtcaattttaacccaaaa-tcactcatccgagttgtttttcattctatcctaattaaataaatgatttccacatattgtcagttttct 21954859  T
Q  557 tacgtttgttttt 569  Q
    | ||| |||||||    
T  21954858 ttcgtctgttttt 21954846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 569
Target Start/End: Complemental strand, 4621494 - 4621395
Alignment:
Q  470 gtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||| ||||||| ||||||||| | | | | ||||||||| ||||| | |||||||||||| ||||||| || ||||| |||||||| |||||||||||    
T  4621494 gtcaattttgacctaaaaatcactctttcgagttgtttttccttctaccataattgaataagcgatttcatatgttttcagttttctttcgtttgttttt 4621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 569
Target Start/End: Original strand, 32643014 - 32643105
Alignment:
Q  478 tgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||||| | ||||   ||| ||||||  ||||| | |||||||| |||||||||||||||||||||||||||||  ||||||||||    
T  32643014 tgacccaaaaataatccctttgattcgttttttcttctaccttaattgaacaagtgatttcacatattttctgttttcttttgtttgttttt 32643105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 554
Target Start/End: Complemental strand, 9720103 - 9720017
Alignment:
Q  462 gatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    ||||||||||||| |||||| |||||||      ||| | ||||||||  || |||| |||||||||||||||||||||||||||||||||||    
T  9720103 gatttatggtcaattttgactcaaaaat------tccaaattgttttttcttatatcgtaattgaataagtgatttcacatattttctgtttt 9720017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 538
Target Start/End: Original strand, 39707272 - 39707351
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttc 538  Q
    |||||||||| |||||| |||||||||||| ||| | |||| | ||||||||| ||||||||||||| ||||||| |||||    
T  39707272 gggtgatttagggtcaattttgacccaaaa-tcatcactccgagttgtttttctttctatcctaattaaataagttatttc 39707351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 569
Target Start/End: Complemental strand, 14657917 - 14657849
Alignment:
Q  503 tgtttttcattctatcctaattgaataagtgatttcac--atattttctgttttcttacgtttgttttt 569  Q
    |||||||| ||||||| ||||||||||||| |||||||  |||||||| ||||||||  ||||||||||    
T  14657917 tgtttttccttctatcttaattgaataagttatttcacatatattttcagttttcttttgtttgttttt 14657849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 566
Target Start/End: Original strand, 17221643 - 17221754
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgattt-cacatattttctgtt 552  Q
    ||||||||||||||| || || ||||||| ||||||||||||||  | ||||||| |||| ||  |||||||||||  |||||| ||||||||||| | |    
T  17221643 agaggggtgatttatagtgaattttgacc-aaaaatcacccctctgaattgtttt-cattatactctaattgaatatatgattttcacatattttcaggt 17221740  T
Q  553 ttcttacgtttgtt 566  Q
    ||||| ||||||||    
T  17221741 ttctttcgtttgtt 17221754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 510
Target Start/End: Complemental strand, 36719680 - 36719628
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttc 510  Q
    |||||||||| |||||| ||||| ||||||||||||||||| | |||||||||    
T  36719680 gggtgatttagggtcaattttgatccaaaaatcacccctccgaattgtttttc 36719628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 40761567 - 40761611
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcc 498  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||    
T  40761567 agagggatgatttagggtcaattttgacccaaaaatcacccctcc 40761611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 564
Target Start/End: Original strand, 40761659 - 40761699
Alignment:
Q  524 tgaataagtgatttcacatattttctgttttcttacgtttg 564  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  40761659 tgaataagtgatttcacatattttatgttttctttcgtttg 40761699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 569
Target Start/End: Original strand, 26161038 - 26161073
Alignment:
Q  534 atttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||||||||||||||||| |||||||||||    
T  26161038 atttcacatattttctgttttctttcgtttgttttt 26161073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 568
Target Start/End: Original strand, 29352275 - 29352338
Alignment:
Q  506 ttttcattctatcctaattgaataagtgattt-cacatattttctgttttcttacgtttgtttt 568  Q
    |||| ||| |||||||||| |||||||||||| |||||||| || |||||||| ||||||||||    
T  29352275 tttttattatatcctaattaaataagtgatttccacatattctcagttttctttcgtttgtttt 29352338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 48652591 - 48652476
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  48652591 agaggggtgatttagggtcaactttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttcacatattttctgttt 48652492  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  48652491 tctttcgtttgttttt 48652476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 36691950 - 36691835
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36691950 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgagttatttttccttctatcctaattgaataagtgatttcacatattttctgttt 36691851  T
Q  554 tcttacgtttgttttt 569  Q
     ||| |||||||||||    
T  36691850 cctttcgtttgttttt 36691835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 11819061 - 11819176
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||||||| |||||    
T  11819061 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttcacatattttatgttt 11819160  T
Q  554 tcttacgtttgttttt 569  Q
    |||| | |||||||||    
T  11819161 tctttcatttgttttt 11819176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 32080901 - 32080790
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||||    
T  32080901 gggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataggtgatttcacatattttctgttttctt 32080802  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  32080801 tcgtttgttttt 32080790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 3456921 - 3457036
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||||||||| ||||| |||||||||||| |||| | ||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  3456921 agaggggtgatttatggtcaattttgatccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgatttaacatattttttgttt 3457020  T
Q  554 tcttacgtttgttttt 569  Q
    |||| | |||||||||    
T  3457021 tctttcctttgttttt 3457036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 14585440 - 14585555
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||  ||||| ||||||||||||||||| ||||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14585440 agaggggtgatttagagtcaattttgacccaaaaatcactcctctaaattgtttttccttctatcctaattgaataagtgatttcacatattttctgttt 14585539  T
Q  554 tcttacgtttgttttt 569  Q
    ||||  ||||||||||    
T  14585540 tcttttgtttgttttt 14585555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 31270308 - 31270419
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| ||||||||||||||||||||| | | || |||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  31270308 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattatttttccttctatcctaattgaataagtgatttcacatattttatgttttctt 31270407  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  31270408 tcgtttgttttt 31270419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 31462897 - 31462782
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||| | | ||||||||| || ||||||||||||||||||||||| |||||||||||||||    
T  31462897 agaggggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgattttacatattttctgttt 31462798  T
Q  554 tcttacgtttgttttt 569  Q
    ||||  ||||||||||    
T  31462797 tcttttgtttgttttt 31462782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 456 - 569
Target Start/End: Complemental strand, 54239167 - 54239054
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| ||| |||||||| | ||||||||| | ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54239167 aggggtgatttaaggttaaatttgatcaaaaaatcacacatccgaattgtttttccttctatcctaattgaataagtgatttcacatattttctgttttc 54239068  T
Q  556 ttacgtttgttttt 569  Q
    || |||||||||||    
T  54239067 tttcgtttgttttt 54239054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 13702123 - 13702008
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||||||||| |||||||| | | || |||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  13702123 agaggggtgatttagggtcaattttgacccaaaagtcaccccttcgaattatttttctttctatcataattgaataagtgatttcacatattttctgttt 13702024  T
Q  554 tcttacgtttgttttt 569  Q
    |||| | |||||||||    
T  13702023 tctttcatttgttttt 13702008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 34961009 - 34960894
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||  | ||||||||  |||||| ||||||||||||||||||||||||||||| |||||    
T  34961009 agaggggtgacttagggtcaattttgacccaaaaatcacccctcagaattgttttttcttctattctaattgaataagtgatttcacatattttatgttt 34960910  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  34960909 tctttcgtttgttttt 34960894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 53155581 - 53155466
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||| | | | ||||||||| || |||||||||| |||||||||||||||||||||| |||||    
T  53155581 agaggggtgatttagggtcaattttgacccaaaaatcacccattcgaattgtttttccttatatcctaattcaataagtgatttcacatattttatgttt 53155482  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  53155481 tctttcgtttgttttt 53155466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 49628239 - 49628123
Alignment:
Q  454 agaggggtgatttatgg-tcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    ||||||||||||| ||| |||| ||||||| ||||||||||||||  | ||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  49628239 agaggggtgatttttgggtcaattttgacctaaaaatcacccctctgaattgtttttccttctatcctagttgaataagtgatttcacatattttttgtt 49628140  T
Q  553 ttcttacgtttgttttt 569  Q
    ||||| |||||||||||    
T  49628139 ttctttcgtttgttttt 49628123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 55090734 - 55090619
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| ||| || ||  ||||||||||||||||||| ||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||    
T  55090734 agaggggtgatttagggttaatttcaacccaaaaatcacccctccgatttgtttttccttctaccttaattaaataagtgatttcacatattttctgttt 55090635  T
Q  554 tcttacgtttgttttt 569  Q
    |||| | |||||||||    
T  55090634 tctttcatttgttttt 55090619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 454 - 568
Target Start/End: Complemental strand, 1075044 - 1074931
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||| || ||| |||||||||||||||| ||||||  ||||||||||    
T  1075044 agaggggtgatttatggtcaattttgacccaaaaatcacccatccgagttgtttttccttatattctaattgaataagtga-ttcacacgttttctgttt 1074946  T
Q  554 tcttacgtttgtttt 568  Q
    |||| ||||||||||    
T  1074945 tctttcgtttgtttt 1074931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 454 - 563
Target Start/End: Complemental strand, 30156432 - 30156324
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | ||| ||||| || ||||||||||||||||||||||||||||||||| || ||    
T  30156432 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattg-ttttccttttatcctaattgaataagtgatttcacatattttatgatt 30156334  T
Q  554 tcttacgttt 563  Q
    |||| |||||    
T  30156333 tctttcgttt 30156324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 456 - 569
Target Start/End: Original strand, 35174684 - 35174797
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||| ||| | |||||| || ||||||||||||||||||   | ||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  35174684 aggggttattaagggtcaatttcgacccaaaaatcacccctttgaattgtttttccttctatcctaattgaataagtgatttcacatattttttgttttc 35174783  T
Q  556 ttacgtttgttttt 569  Q
    || |||||||||||    
T  35174784 tttcgtttgttttt 35174797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 4206662 - 4206547
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||| | |||||||||  | ||||||||||||||||||| ||||||||||||| | |||    
T  4206662 agaggggtgatttatggtcaattttgatcaaaaaatcacccctccgaattgtttttccatatatcctaattgaataagtgttttcacatattttttattt 4206563  T
Q  554 tcttacgtttgttttt 569  Q
    ||||  ||||||||||    
T  4206562 tcttttgtttgttttt 4206547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 36624845 - 36624730
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||| | ||||||   ||||||||||||||||| ||| | ||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  36624845 agaggggtgattcagggtcaatcatgacccaaaaatcacccatccgaattgtttttccttctatcctaactaaataagtgatttcacatattttctgttt 36624746  T
Q  554 tcttacgtttgttttt 569  Q
    ||||  ||||||||||    
T  36624745 tcttttgtttgttttt 36624730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 38527241 - 38527356
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| | ||||  |||| ||||||||||| | ||| | ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  38527241 agaggggtgatttaggatcaatcttgaaccaaaaatcacacatccaaattgtttttccttctatcttaattgaataaatgatttcacatattttctgttt 38527340  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  38527341 tctttcgtttgttttt 38527356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 569
Target Start/End: Complemental strand, 40013421 - 40013308
Alignment:
Q  459 ggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcct---aattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||  ||||| ||||||||||||||||||| | | | ||||||||| |||||||||   |||||||||||||||||||||||||||||||||||    
T  40013421 ggtgatttagtgtcaattttgacccaaaaatcacccattcgaattgtttttccttctatcctcctaattgaataagtgatttcacatattttctgttttc 40013322  T
Q  556 ttacgtttgttttt 569  Q
    || |||||||||||    
T  40013321 tttcgtttgttttt 40013308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 48400877 - 48400992
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||| | ||  | ||||||||| ||||| |||| || |||||||||||||||||||||| |||||    
T  48400877 agaggggtgatttagggtcaattttgacccaaaaatcacacatcggaattgtttttccttctaccctattttaataagtgatttcacatattttttgttt 48400976  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  48400977 tctttcgtttgttttt 48400992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 39610182 - 39610305
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt--------cattctatcctaattgaataagtgatttcacatatt 545  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| | ||||||||        | ||||||||||||||||||||||||||||||||||    
T  39610182 agaggggtgatttatggtcaattttgacccaataatcacccctccgagttgttttttttttcttccttctatcctaattgaataagtgatttcacatatt 39610281  T
Q  546 ttctgttttcttacgtttgttttt 569  Q
    || ||||| ||| |||||||||||    
T  39610282 ttttgtttcctttcgtttgttttt 39610305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 476 - 569
Target Start/End: Original strand, 22484965 - 22485058
Alignment:
Q  476 tttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||||||||||| | |||   ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  22484965 tttgacccaaaaatcactcttccggattgtttttccttctatcctaattgaataagtgatttcgcatattttctgttttctttcgtttgttttt 22485058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 470 - 569
Target Start/End: Complemental strand, 24483813 - 24483714
Alignment:
Q  470 gtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||| |||||| || ||||||||| ||  | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  24483813 gtcaattttgacacacaaatcacccatctgaattgtttttcattctatcataattgaataagtgatttcacatattttctgttttcatacatttgttttt 24483714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 456 - 569
Target Start/End: Complemental strand, 40884018 - 40883904
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt-cattctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    |||||||||||| |||||| |||||||||||||||| |  | | | |||||||| | || |||||||||||||||||||||||||| |||||||||||||    
T  40884018 aggggtgatttagggtcaattttgacccaaaaatcatcaattcgaattgttttttccttttatcctaattgaataagtgatttcacttattttctgtttt 40883919  T
Q  555 cttacgtttgttttt 569  Q
    ||| |||||||||||    
T  40883918 ctttcgtttgttttt 40883904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 454 - 554
Target Start/End: Complemental strand, 27189545 - 27189445
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||  ||||| ||||| |||||||| || | ||| | ||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  27189545 agaggggtgatttagagtcaattttgatccaaaaattactcttccgaattgtttttccttctatcctaattgaataagtaatttcacataatttctgttt 27189446  T
Q  554 t 554  Q
    |    
T  27189445 t 27189445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 505 - 569
Target Start/End: Complemental strand, 41868394 - 41868330
Alignment:
Q  505 tttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  41868394 tttttccttctatcctaattgaataagtgatttcacatattttctgttttctttcgtttgctttt 41868330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 19645203 - 19645314
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| ||||||| ||||| || || ||| | ||||||||  |||| |||||||| ||||||||||||||||||||||||||||| ||    
T  19645203 gggtgatttagggtcaattttgacctaaaaaccatccatccgaattgttttttcttctgtcctaattaaataagtgatttcacatattttctgttttttt 19645302  T
Q  558 acgtttgttttt 569  Q
     | |||||||||    
T  19645303 tcctttgttttt 19645314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 486 - 568
Target Start/End: Complemental strand, 4817949 - 4817867
Alignment:
Q  486 aaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgtttt 568  Q
    |||| |||||||| | ||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  4817949 aaattacccctccaaattgtttttctttttatcctaattgaataggtgatttcacatattttctattttctttcgtttgtttt 4817867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 34103802 - 34103753
Alignment:
Q  520 taattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34103802 taattgaataagtgatttcacatattttctgttttctttcgtttgttttt 34103753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 460 - 537
Target Start/End: Original strand, 53402614 - 53402691
Alignment:
Q  460 gtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgattt 537  Q
    |||||||| |||||| ||||||||||||||||||| ||| | ||||||||| |||||| |||||| ||||||||||||    
T  53402614 gtgatttaaggtcaattttgacccaaaaatcacccatccgaattgtttttccttctattctaattcaataagtgattt 53402691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 500 - 569
Target Start/End: Original strand, 33637427 - 33637496
Alignment:
Q  500 atttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||||| ||||| | |||||||||||  ||||||||||||||||||||||||| ||||| |||||    
T  33637427 atttgtttttccttctaccttaattgaataaaagatttcacatattttctgttttctttcgtttattttt 33637496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 106139 - 106071
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtga-tttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||||  |||||||| |||||||||||    
T  106139 ttgtttttcattctaccctaattaaataagtgattttcacatatttttagttttctttcgtttgttttt 106071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 2147756 - 2147820
Alignment:
Q  506 ttttcattctatcctaattgaataagtgattt-cacatattttctgttttcttacgtttgttttt 569  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||    
T  2147756 ttttcgttctatcctaattgaataagtgatttccacatattttcagttttctttcatttgttttt 2147820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 3312487 - 3312536
Alignment:
Q  520 taattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  3312487 taattgaataagtgatttcacatattttaagttttctttcgtttgttttt 3312536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 554
Target Start/End: Complemental strand, 19861428 - 19861331
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||| ||||||||| |||||| |||||| |||||||||||| |   | |||||| || |||  || ||||||||||||||||||||||||||| ||||||    
T  19861428 agagaggtgatttagggtcaattttgactcaaaaatcacccatg--agttgtttgtccttcc-tcataattgaataagtgatttcacatatttcctgttt 19861332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 4512893 - 4512853
Alignment:
Q  343 aatgggtcaaacataatttaaagtgaagcgaccaaataact 383  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  4512893 aatgggttagacataatttaaagtgaagcgaccaaataact 4512853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 557
Target Start/End: Complemental strand, 54706788 - 54706716
Alignment:
Q  486 aaatcacccctcctatttgtttttcattctat-cctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||| |||||||| | ||||||||| || ||| || |||| |||||||||||||||||||||||| |||||||    
T  54706788 aaattacccctccaaattgtttttccttttattcccaattcaataagtgatttcacatattttctattttctt 54706716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 509
Target Start/End: Original strand, 48854889 - 48854939
Alignment:
Q  459 ggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt 509  Q
    ||||||||  |||||| ||| ||||||||||||||||||| ||||||||||    
T  48854889 ggtgattttgggtcaattttaacccaaaaatcacccctccgatttgttttt 48854939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 526 - 569
Target Start/End: Original strand, 4219229 - 4219273
Alignment:
Q  526 aataagtgattt-cacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||||| ||||||||||| |||||||| |||||||||||    
T  4219229 aataagtgattttcacatattttcagttttctttcgtttgttttt 4219273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 497
Target Start/End: Original strand, 49628194 - 49628238
Alignment:
Q  454 agaggggtgatttat-ggtcaaatttgacccaaaaatcacccctc 497  Q
    ||||||||||||| | ||||||| |||||||||||||||||||||    
T  49628194 agaggggtgatttttaggtcaaaattgacccaaaaatcacccctc 49628238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 12481513 - 12481398
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| | |||| ||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  12481513 agaggggtgatttaggatcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttcacatattttctgttt 12481414  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  12481413 tctttcgtttgttttt 12481398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 15590222 - 15590107
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||  | ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  15590222 agaggggtgatttagggtcaattttgacccaaaaatcacccctctgaattgttttttcttctatcctaattgaataagtgatttcacatattttctgttt 15590123  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||| ||||    
T  15590122 tctttcgtttgctttt 15590107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 21507951 - 21507836
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||| |||||    
T  21507951 agaggggtgatttagggtcaattttgacccaaacatcacccctccaaattgtttttccttctatcctagttgaataagtgatttcacatattttttgttt 21507852  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  21507851 tctttcgtttgttttt 21507836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 8693803 - 8693685
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcct---aattgaataagtgatttcacatattttctg 550  Q
    |||||||||||||| |||||| ||||||||||||||||||| ||| | ||||||||| |||||||||   ||||||||||||||||||||||||||||||    
T  8693803 agaggggtgatttaaggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctcctaattgaataagtgatttcacatattttctg 8693704  T
Q  551 ttttcttacgtttgttttt 569  Q
    ||||||| |||||||||||    
T  8693703 ttttctttcgtttgttttt 8693685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 6420001 - 6419886
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  6420001 agaggggtgatttagggtcaattttgatccaaaaatcacccctctgagttgtttttccttctatcctaattgaataagtgatttcacatattttttgttt 6419902  T
Q  554 tcttacgtttgttttt 569  Q
    |||| | |||||||||    
T  6419901 tctttcatttgttttt 6419886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 14783314 - 14783211
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||| ||||||| |||||| ||||||||||||||||| ||||| | ||||||||| |||||||||| ||||||||||||||||||||||||| |||||    
T  14783314 agagggctgatttagggtcaattttgacccaaaaatcacgcctccgaattgtttttccttctatcctagttgaataagtgatttcacatattttttgttt 14783215  T
Q  554 tctt 557  Q
    ||||    
T  14783214 tctt 14783211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 23654228 - 23654343
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||| ||||||||| |||||| ||||||||||||||||||| ||| ||||||||||| ||||| | ||| |||||||||||||||||||||||| |||||    
T  23654228 agagaggtgatttagggtcaattttgacccaaaaatcacccatccgatttgtttttccttctaccttaactgaataagtgatttcacatattttttgttt 23654327  T
Q  554 tcttacgtttgttttt 569  Q
    | || |||||||||||    
T  23654328 tatttcgtttgttttt 23654343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 31937557 - 31937448
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||  ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||    
T  31937557 gggtgatttagggtcagttttgacccaaaaatcacccctccgaattgtttttc-ttctatcctaattgaataagtgatttcacatattttctgattt-tt 31937460  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  31937459 tcgtttgttttt 31937448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 2304953 - 2304838
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| | || | |||||||||||||||| |||||  | ||||||| | |||| || ||||||||||||||||||||||||||||||||||    
T  2304953 agaggggtgatttaggatcgattttgacccaaaaatcaaccctctgagttgttttcccttctgtcataattgaataagtgatttcacatattttctgttt 2304854  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  2304853 tctttcgtttgttttt 2304838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 455 - 568
Target Start/End: Complemental strand, 35220045 - 35219933
Alignment:
Q  455 gaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    ||||||||||||| |||||| |||||| |||||||||||||||| | ||||||| | |||||||| ||| ||||||||||| ||||||||||||||||||    
T  35220045 gaggggtgatttagggtcaattttgactcaaaaatcacccctccaagttgttttcc-ttctatccgaatcgaataagtgatatcacatattttctgtttt 35219947  T
Q  555 cttacgtttgtttt 568  Q
    |||  |||||||||    
T  35219946 cttttgtttgtttt 35219933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 455 - 569
Target Start/End: Complemental strand, 19402950 - 19402836
Alignment:
Q  455 gaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    ||||||||||||  |||||  ||||| |||||||||||||||   | ||||||||| || |||| |||||||| ||||||||||||||||||||||||||    
T  19402950 gaggggtgatttcgggtcacttttgatccaaaaatcacccctttgagttgtttttccttgtatcataattgaacaagtgatttcacatattttctgtttt 19402851  T
Q  555 cttacgtttgttttt 569  Q
    ||| |||||||||||    
T  19402850 ctttcgtttgttttt 19402836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 456 - 569
Target Start/End: Complemental strand, 4922023 - 4921909
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt--cattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||| |||||| |||||||||||||| |||||||| | | ||||||  | ||||||| ||||||||||||||||||||||||||||| ||||    
T  4922023 aggggtgatttagggtcaattttgacccaaaaat-acccctcccagtagtttttttccttctatcttaattgaataagtgatttcacatattttcagttt 4921925  T
Q  554 tcttacgtttgttttt 569  Q
    | || |||||||||||    
T  4921924 tatttcgtttgttttt 4921909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 483 - 569
Target Start/End: Original strand, 4393777 - 4393863
Alignment:
Q  483 caaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||||||||  | ||||||| | |||||||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||    
T  4393777 caaaaatcacccctctgagttgttttaccttctatcctaatagaacaagtgatttcacatattttcttttttctttcgtttgttttt 4393863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 460 - 529
Target Start/End: Complemental strand, 29927516 - 29927447
Alignment:
Q  460 gtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaata 529  Q
    ||||||||||||||| ||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||    
T  29927516 gtgatttatggtcaattttgacccaaaaatcactcctccaagttgtttttccttctatcctaattgaata 29927447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 23638195 - 23638150
Alignment:
Q  520 taattgaataagtgatttcacatattttctgttttcttacgtttgt 565  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  23638195 taattgaataagtgatttcacatattttctgttttctttcgtttgt 23638150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 505 - 569
Target Start/End: Complemental strand, 6296341 - 6296277
Alignment:
Q  505 tttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||  |||||| |||||||||||    
T  6296341 tttttccttctaccctaattgaataagtggtttcacatattttctagtttctttcgtttgttttt 6296277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 505 - 569
Target Start/End: Complemental strand, 6303151 - 6303087
Alignment:
Q  505 tttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||  |||||| |||||||||||    
T  6303151 tttttccttctaccctaattgaataagtggtttcacatattttctagtttctttcgtttgttttt 6303087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 513 - 554
Target Start/End: Complemental strand, 31937615 - 31937574
Alignment:
Q  513 tctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  31937615 tctatcctaattgaataagtgatttaacatattttctgtttt 31937574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 517 - 557
Target Start/End: Original strand, 15057722 - 15057762
Alignment:
Q  517 tcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  15057722 tcctaattgaatacgtgatttcacatattttctgttttctt 15057762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 569
Target Start/End: Complemental strand, 29927163 - 29927122
Alignment:
Q  528 taagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||||||| ||||||||||||||| |||||||||||    
T  29927163 taagtgatttcacaaattttctgttttctttcgtttgttttt 29927122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 518
Target Start/End: Original strand, 4084996 - 4085060
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatc 518  Q
    |||||||||||||| |||||| ||||||| |||||||| || ||| | ||||||||| |||||||    
T  4084996 agaggggtgatttagggtcaattttgaccgaaaaatcatccttccgaattgtttttccttctatc 4085060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 569
Target Start/End: Original strand, 31705170 - 31705258
Alignment:
Q  476 tttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||||| |||||||||| |||| |||||   || || |||||||||||| | |||||||||||||||| ||||||| |||||| ||||    
T  31705170 tttgacccaaaa-tcacccctccgatttcttttt---tc-attctaattgaataaataatttcacatattttctattttcttccgtttgctttt 31705258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 568
Target Start/End: Original strand, 2488169 - 2488231
Alignment:
Q  507 tttcattctatcctaattgaataagtgattt-cacatattttctgttttcttacgtttgtttt 568  Q
    |||| |||||||||||| ||||||||||||| ||| |||||||  ||||||| ||||||||||    
T  2488169 tttccttctatcctaatcgaataagtgatttccacgtattttcatttttctttcgtttgtttt 2488231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 29268920 - 29268805
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||||| |||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  29268920 agaggggtgatttaaggtcaattttgaccctaaaatcacccctccgagttgtttttccttttatcctaattgaataagtgatttcacatattttctgttt 29268821  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  29268820 tctttcgtttgttttt 29268805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 6911658 - 6911773
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||| |||||||||||| |||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  6911658 agaggggtgatttagggtcaattttgatccaaaaatcacctctccgatttgtttttccttctaccttaattgaataagtgatttcacatattttctgttt 6911757  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  6911758 tctttcgtttgttttt 6911773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 7060302 - 7060417
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||| ||||| |||||| ||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  7060302 agaggggtaatttagggtcaattttaacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttcacatattttatgttt 7060401  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  7060402 tctttcgtttgttttt 7060417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 30202016 - 30202131
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||| ||||||||||||||| ||| ||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  30202016 agaggggtgatttaaggtcaattttgatccaaaaatcaccccttctagttgtttttccttttatcttaattgaataagtgatttcacatattttctgttt 30202115  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  30202116 tctttcgtttgttttt 30202131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 43244524 - 43244409
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||  |||    
T  43244524 agaggggtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttttccttctatcctaattgaataagtgatttcacatattttcgattt 43244425  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  43244424 tctttcgtttgttttt 43244409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 44757185 - 44757070
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||| | | | ||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  44757185 agaggggtgatttaaggtcaattttgacccaaaaatcacccattcgagttgtttttccttctatcctaattgaataagtgatttcacatattttatgttt 44757086  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  44757085 tctttcgtttgttttt 44757070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 456 - 569
Target Start/End: Original strand, 8712510 - 8712623
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| |||||| |||||||||||||||||||||| || ||||||||| |||||||||| |||| |||||||||||||||||||| |||||||    
T  8712510 aggggtgatttagggtcaattttgacccaaaaatcacccctcataattgtttttccttctatcctagttgagtaagtgatttcacatattttttgttttc 8712609  T
Q  556 ttacgtttgttttt 569  Q
    || |||||||||||    
T  8712610 tttcgtttgttttt 8712623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 456 - 568
Target Start/End: Original strand, 51152105 - 51152217
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| ||||||  |||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  51152105 aggggtgatttanggtcaatattgacccaaaaatcacccctccgaattgtttttccttctatcctaatttaataagtgatttcacatattttctgctttc 51152204  T
Q  556 ttacgtttgtttt 568  Q
    || ||||||||||    
T  51152205 tttcgtttgtttt 51152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 455 - 567
Target Start/End: Complemental strand, 394416 - 394304
Alignment:
Q  455 gaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||    
T  394416 gaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattcaataagtgatttcacatcttttctgcttt 394317  T
Q  555 cttacgtttgttt 567  Q
    ||| |||||||||    
T  394316 ctttcgtttgttt 394304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 22757072 - 22757187
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||| ||||||||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  22757072 agaggggtgatttagggtcaattttgactcaaaaatcaccactccgaattgtttttccttctatcctaattgaataagtgatttcacatattttatgttt 22757171  T
Q  554 tcttacgtttgttttt 569  Q
    | || |||||||||||    
T  22757172 tttttcgtttgttttt 22757187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 24825627 - 24825742
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| | |||| ||||||| ||||||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  24825627 agaggggtgatttaggatcaattttgacctaaaaatcactcctccgagttgtttttccttctatcctaattgaataagtgatttcacatattttctattt 24825726  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  24825727 tctttcgtttgttttt 24825742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 458 - 568
Target Start/End: Complemental strand, 26742602 - 26742492
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| | |||| ||||||||||||||||||| ||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  26742602 gggtgatttaggatcaattttgacccaaaaatcacccatccgaattgtttttctttctatcttaattgaataagtgatttcacatattttctgttttctt 26742503  T
Q  558 acgtttgtttt 568  Q
     ||||||||||    
T  26742502 tcgtttgtttt 26742492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 454 - 570
Target Start/End: Original strand, 39837572 - 39837689
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttca-ttctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    ||||||||||||||  ||||| ||||||||||||||||||||| | |||| ||||||  || ||||||||||||||||||||||||||||||||||||||    
T  39837572 agaggggtgatttagcgtcaattttgacccaaaaatcaccccttcgatttttttttcccttttatcctaattgaataagtgatttcacatattttctgtt 39837671  T
Q  553 ttcttacgtttgtttttt 570  Q
    ||||| ||||||||||||    
T  39837672 ttctttcgtttgtttttt 39837689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 461 - 569
Target Start/End: Original strand, 13965545 - 13965653
Alignment:
Q  461 tgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacg 560  Q
    ||||||| |||||| ||||||||||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||    
T  13965545 tgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcctaattgaataagtgatttcacatattctatgttttctttcg 13965644  T
Q  561 tttgttttt 569  Q
    |||||||||    
T  13965645 tttgttttt 13965653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 456 - 568
Target Start/End: Original strand, 31521962 - 31522074
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| |||||| ||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| | |||||||    
T  31521962 aggggtgatttagggtcaattttgacctaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttcacatattctttgttttc 31522061  T
Q  556 ttacgtttgtttt 568  Q
    ||  |||||||||    
T  31522062 tttagtttgtttt 31522074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 478154 - 478040
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||| | ||||||||| || ||||||||||||||||||||||| |||||||||||||||    
T  478154 agaggggtgatttatggtcaattttgacccaaaaatcacca-tccgaattgtttttccttatatcctaattgaataagtgattttacatattttctgttt 478056  T
Q  554 tcttacgtttgttttt 569  Q
     ||| ||||| |||||    
T  478055 cctttcgtttattttt 478040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 456 - 575
Target Start/End: Original strand, 19745369 - 19745488
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| | |||| ||||||||||||||||  | ||| | ||||||||  || |||||||||||||||| ||||||||||||||||||||||||    
T  19745369 aggggtgatttaggatcaattttgacccaaaaatcattcatccgaattgtttttgcttttatcctaattgaataattgatttcacatattttctgttttc 19745468  T
Q  556 ttacgtttgttttttgtgat 575  Q
    || |||||||||||||||||    
T  19745469 tttcgtttgttttttgtgat 19745488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 456 - 575
Target Start/End: Complemental strand, 19794437 - 19794318
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| | |||| ||||||||||||||||  | ||| | ||||||||  || |||||||||||||||| ||||||||||||||||||||||||    
T  19794437 aggggtgatttaggatcaattttgacccaaaaatcattcatccgaattgtttttgcttttatcctaattgaataattgatttcacatattttctgttttc 19794338  T
Q  556 ttacgtttgttttttgtgat 575  Q
    || |||||||||||||||||    
T  19794337 tttcgtttgttttttgtgat 19794318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 24568856 - 24568741
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| ||| || ||||||||||||||||||| ||| | || |||||| |||||||||||||||||||||||||| ||||||| |||||||    
T  24568856 agaggggtgatttagggtgaattttgacccaaaaatcacccttccgaattatttttccttctatcctaattgaataagtgattttacatattatctgttt 24568757  T
Q  554 tcttacgtttgttttt 569  Q
    | || |||||||||||    
T  24568756 tatttcgtttgttttt 24568741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 25658145 - 25658260
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| ||| || |||||| ||||||||||| |||| | ||||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  25658145 agaggggtgatttagggttaattttgactcaaaaatcacctctccaaattgtttttccttctttcctaatttaataagtgatttcacatattttctgttt 25658244  T
Q  554 tcttacgtttgttttt 569  Q
    |||| ||| |||||||    
T  25658245 tctttcgtatgttttt 25658260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 26674354 - 26674465
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| | |||| ||||||| ||||||||||||||| | ||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  26674354 gggtgatttaggatcaattttgacctaaaaatcacccctccaaattgcttttccttctatcataattgaataagtgatttcacatattttttgttttctt 26674453  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  26674454 tcgtttgttttt 26674465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 478 - 569
Target Start/End: Original strand, 6881958 - 6882049
Alignment:
Q  478 tgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||||||||||||| | | || |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  6881958 tgacccaaaaatcaccccttcgagttatttttccttctatcctaattaaataagtgatttcacatattttctgttttctttcgtttgttttt 6882049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 24611942 - 24611827
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||||||||| || |||||||||||||||||||  | |  |||| | |||||||||||||||||||||||||||||||||||||| |||    
T  24611942 agaggggtgatttatggtcaatttagacccaaaaatcacccctctaagtcattttcccttctatcctaattgaataagtgatttcacatattttctattt 24611843  T
Q  554 tcttacgtttgttttt 569  Q
    | || |||||| ||||    
T  24611842 tttttcgtttgctttt 24611827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 463 - 569
Target Start/End: Complemental strand, 7083950 - 7083844
Alignment:
Q  463 atttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtt 562  Q
    ||||| |||||| ||||| |||||||||||||||   | ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  7083950 atttagggtcaattttgatccaaaaatcacccctatgaattgtttttccttctatcataattgaataagtgatttcacatattttctattttctttcgtt 7083851  T
Q  563 tgttttt 569  Q
    |||||||    
T  7083850 tgttttt 7083844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 24100117 - 24100234
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattt--tctgt 551  Q
    |||||||||||||| | |||| ||||| |||||||| |||| ||| | ||||||||| ||||||| |||||||||||||||||||||||||||  |||||    
T  24100117 agaggggtgatttaggatcaattttgaaccaaaaattacccatccgaattgtttttccttctatcgtaattgaataagtgatttcacatattttctctgt 24100216  T
Q  552 tttcttacgtttgttttt 569  Q
    |||||| |||||||||||    
T  24100217 tttctttcgtttgttttt 24100234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 456 - 569
Target Start/End: Original strand, 27394810 - 27394923
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| |||||| ||||||||||||||||||| |||   || |||||| ||||||||||||||||||||| |||| | ||||||| |||||||    
T  27394810 aggggtgatttagggtcaattttgacccaaaaatcacccttccggattatttttccttctatcctaattgaataagtaatttaaaatattttatgttttc 27394909  T
Q  556 ttacgtttgttttt 569  Q
    || |||||||||||    
T  27394910 tttcgtttgttttt 27394923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 469 - 569
Target Start/End: Complemental strand, 38944275 - 38944176
Alignment:
Q  469 ggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgtttt 568  Q
    |||||| |||| |||||||||||||||||| | ||||||||| ||||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  38944275 ggtcaattttggcccaaaaatcacccctccaaattgtttttccttctatcgtagttgaataagtgatttcacatatttt-tgttttctttcgtttgtttt 38944177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 11210456 - 11210341
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||| || ||||||||||||||| | || |||||| | | ||| ||||||||||||||||||||||||||| || |||    
T  11210456 agaggggtgatttagggtcaattttgccctaaaaatcacccctccgaattatttttcctcccatcataattgaataagtgatttcacatatttactcttt 11210357  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  11210356 tctttcgtttgttttt 11210341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 462 - 569
Target Start/End: Complemental strand, 20400038 - 20399931
Alignment:
Q  462 gatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgt 561  Q
    |||||| |||||| |||||||||||||||||||  || | ||| ||||  |||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  20400038 gatttagggtcaattttgacccaaaaatcacccacccgaattgctttttcttctatcctaattgaataagtgatttcatatattttctgttttctttcgt 20399939  T
Q  562 ttgttttt 569  Q
    || |||||    
T  20399938 ttattttt 20399931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 569
Target Start/End: Original strand, 5814330 - 5814440
Alignment:
Q  459 ggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctta 558  Q
    ||||||||| |||||| ||||| |||||||||| |||||| | ||||||| | ||||||| ||||||||||||| ||||||||||||||  ||||||||     
T  5814330 ggtgatttagggtcaattttgatccaaaaatcatccctccaagttgttttcccttctatcttaattgaataagttatttcacatatttttagttttcttt 5814429  T
Q  559 cgtttgttttt 569  Q
    |||||||||||    
T  5814430 cgtttgttttt 5814440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 29922812 - 29922930
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt---cattctatcctaattgaataagtgatttcacatattttctg 550  Q
    |||| ||||||||| |||||| ||||||| || |||||||||||| | ||||||||   | ||||||||||||||||||||||||||||||||||||||     
T  29922812 agagaggtgatttagggtcaattttgacctaataatcacccctccaagttgttttttttctttctatcctaattgaataagtgatttcacatattttcta 29922911  T
Q  551 ttttcttacgtttgttttt 569  Q
    ||| ||| ||| |||||||    
T  29922912 tttcctttcgtctgttttt 29922930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 626690 - 626577
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| ||  || ||||||||||||||||||| ||  | || |||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  626690 agaggggtgatttagggctaattttgacccaaaaatcacccatctgaattatttttc-ttctatcataattgaataagtgatt-cacatattttctgttt 626593  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  626592 tctttcgtttgttttt 626577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 458 - 554
Target Start/End: Complemental strand, 7861344 - 7861248
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    ||||||||||   |||| |||||||||||||||||| |||  | || |||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  7861344 gggtgatttagaatcaattttgacccaaaaatcaccactctgaattatttttccttctatcctaattaaataagtgatttcacatattttctgtttt 7861248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 569
Target Start/End: Original strand, 39523435 - 39523502
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  39523435 ttgtttttccttttatcctaattgaataagtgatttcacatgttttctgttttctttcgtttgttttt 39523502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 569
Target Start/End: Complemental strand, 45351205 - 45351098
Alignment:
Q  464 tttatggtcaaatttgacccaaaaatcacccctcctatttgttttt-cattctatcctaatt-gaataagtgatttcacatattttctgttttcttacgt 561  Q
    |||| |||||| ||||| ||||||||||||||||| | |||||||| | || ||| |||||| |||||||||||||||||||||||||||||| || |||    
T  45351205 tttagggtcaattttgatccaaaaatcacccctccgaattgttttttccttttattctaatttgaataagtgatttcacatattttctgttttgtttcgt 45351106  T
Q  562 ttgttttt 569  Q
    ||||||||    
T  45351105 ttgttttt 45351098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 569
Target Start/End: Complemental strand, 45360684 - 45360577
Alignment:
Q  464 tttatggtcaaatttgacccaaaaatcacccctcctatttgttttt-cattctatcctaatt-gaataagtgatttcacatattttctgttttcttacgt 561  Q
    |||| |||||| ||||| ||||||||||||||||| | |||||||| | || ||| |||||| |||||||||||||||||||||||||||||| || |||    
T  45360684 tttagggtcaattttgatccaaaaatcacccctccgaattgttttttccttttattctaatttgaataagtgatttcacatattttctgttttgtttcgt 45360585  T
Q  562 ttgttttt 569  Q
    ||||||||    
T  45360584 ttgttttt 45360577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 484 - 569
Target Start/End: Original strand, 50801225 - 50801310
Alignment:
Q  484 aaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||| || ||||| | || |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  50801225 aaaaataactcctccgaattatttttccttttatcctaattgaataagtgatttcacatattttctgttttctttcgtttattttt 50801310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 458 - 557
Target Start/End: Complemental strand, 22049543 - 22049444
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 556  Q
    |||||||||| ||| || |||||||||||| |||||| | | | ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||    
T  22049543 gggtgatttagggttaattttgacccaaaa-tcaccctttcgaattgtttttccttctatcctaattgaataagtgatttccacatattttcagttttct 22049445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 459 - 569
Target Start/End: Complemental strand, 12717255 - 12717145
Alignment:
Q  459 ggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttctt 557  Q
    |||||||||  ||||| |||||||||||| ||| || ||| | ||||||||  ||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  12717255 ggtgatttagagtcaattttgacccaaaa-tcatccgtccgacttgttttttcttctatcctaattaaataagtgatttccacatattttcagttttctt 12717157  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  12717156 tcgtttgttttt 12717145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 490 - 557
Target Start/End: Complemental strand, 43493394 - 43493327
Alignment:
Q  490 cacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    ||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  43493394 cacccctccgaattgtttttccttctatcttaattgaataagtgatttcacatattttttgttttctt 43493327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 463 - 569
Target Start/End: Complemental strand, 20887889 - 20887784
Alignment:
Q  463 atttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtt 562  Q
    ||||| |||||| ||||||||||||||||||| ||| | || || ||  ||||||| ||||| ||||||||||||||||| ||||||| |||||| ||||    
T  20887889 atttaaggtcaattttgacccaaaaatcacccatccgaattattattttttctatcttaattcaataagtgatttcacat-ttttctgctttctttcgtt 20887791  T
Q  563 tgttttt 569  Q
    |||||||    
T  20887790 tgttttt 20887784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 512 - 569
Target Start/End: Complemental strand, 8517541 - 8517484
Alignment:
Q  512 ttctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  8517541 ttctattctaattgaataagtgattttacatattttctgttttctttcgtttgttttt 8517484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 454 - 546
Target Start/End: Original strand, 7084184 - 7084276
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattt 546  Q
    |||||||||||||| | |||| |||||||||||||| |  | ||| ||||||||||| ||||| | ||||||||||||||||| |||||||||    
T  7084184 agaggggtgatttaggttcaattttgacccaaaaattatgcttccgatttgtttttccttctaccttaattgaataagtgattgcacatattt 7084276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 570
Target Start/End: Original strand, 3159021 - 3159137
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtga-tttcacatattttctgtt 552  Q
    |||||| ||||||| |||||| ||| |||||||| ||||   ||| | ||||||||| ||||||| ||||| ||||||||| |||||||||||||| | |    
T  3159021 agagggatgatttagggtcaacttttacccaaaa-tcactattccgagttgtttttccttctatcataattaaataagtgattttcacatattttcagct 3159119  T
Q  553 ttcttacgtttgtttttt 570  Q
    ||||| ||||||||||||    
T  3159120 ttctttcgtttgtttttt 3159137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 485 - 569
Target Start/End: Original strand, 2447809 - 2447893
Alignment:
Q  485 aaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||||| | | || |||||  |||||||||||||||||||||||||||||||| ||| ||||||| |  ||||||||||    
T  2447809 aaaatcaccccttcgaattatttttttttctatcctaattgaataagtgatttcacataatttatgttttcattagtttgttttt 2447893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 476 - 569
Target Start/End: Complemental strand, 36124468 - 36124377
Alignment:
Q  476 tttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||| ||||||||||| | ||| | ||||||||| | ||||| ||||||||| | |||||||||||||||  ||||||||| |||||||||||    
T  36124468 tttgatccaaaaatcactcatcccaattgtttttcctcctatcttaattgaatgattgatttcacatattt--tgttttctttcgtttgttttt 36124377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 554
Target Start/End: Complemental strand, 13586370 - 13586284
Alignment:
Q  462 gatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    ||||||||||||| |||||| |||||||      ||| | ||||||||  || |||| |||||||||||||||||||||||||||||||||||    
T  13586370 gatttatggtcaattttgactcaaaaat------tccaaattgttttttcttatatcgtaattgaataagtgatttcacatattttctgtttt 13586284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 568
Target Start/End: Original strand, 27090755 - 27090817
Alignment:
Q  507 tttcattctatcctaattgaataagtgattt-cacatattttctgttttcttacgtttgtttt 568  Q
    |||| |||||||||||| ||||||||||||| ||| |||||||  ||||||| ||||||||||    
T  27090755 tttccttctatcctaatcgaataagtgatttccacgtattttcatttttctttcgtttgtttt 27090817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 570
Target Start/End: Complemental strand, 29235405 - 29235293
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattc-tatcctaattgaataagtga-tttcacatattttctgttttc 555  Q
    |||||||||||| |||| |||||| | ||||||| |||||||| ||||||||| ||| | ||| ||||||| |||||| |||||||||||||  || |||    
T  29235405 gggtgatttatgatcaattttgactc-aaaatcaaccctcctaattgtttttccttcatgtcc-aattgaacaagtgattttcacatatttttagtcttc 29235308  T
Q  556 ttacgtttgtttttt 570  Q
    ||  |||||||||||    
T  29235307 ttttgtttgtttttt 29235293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 554
Target Start/End: Original strand, 42197533 - 42197630
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    |||||||||||| ||| || ||||||  |||||||||   ||| | || |||||| ||||||||||||| ||||||||| ||||| |||||| ||||||    
T  42197533 aggggtgatttagggttaattttgacaaaaaaatcactt-tccgaattatttttccttctatcctaatttaataagtgacttcacgtattttttgtttt 42197630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 12704665 - 12704780
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||| | | ||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  12704665 agaggggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgatttcacatattttctgttt 12704764  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  12704765 tctttcgtttgttttt 12704780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 43474271 - 43474156
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  43474271 agaggggtgatttagggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttcacaaattttctgttt 43474172  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  43474171 tctttcgtttgttttt 43474156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 9690116 - 9690001
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |||||||||||||||||||||||| ||||||||||| |||||    
T  9690116 agaggggtgatttaaggtcaaatttgacccaaaaatcacccctccgaactgtttttccttctatcctaattgaataagtgatctcacatattttttgttt 9690017  T
Q  554 tcttacgtttgttttt 569  Q
    | || |||||||||||    
T  9690016 tttttcgtttgttttt 9690001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 20561275 - 20561160
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||| |||||||| ||| ||||||||| |||||||||||||||||||    
T  20561275 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccaaatcgaataagtggtttcacatattttctgttt 20561176  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  20561175 tctttcgtttgttttt 20561160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 22597113 - 22597228
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||||||||||||| |||||| | ||||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  22597113 agaggggtgatttaaggtcaattttgacccaaaaatcatccctccgagttgtttttccttctatcctaattaaataagtgatttcacatattttttgttt 22597212  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  22597213 tctttcgtttgttttt 22597228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 25067830 - 25067945
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  25067830 agagaggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctattttaattgaataagtgatttcacatattttctgttt 25067929  T
Q  554 tcttacgtttgttttt 569  Q
    |||| ||||| |||||    
T  25067930 tctttcgtttcttttt 25067945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 27095687 - 27095798
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| ||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  27095687 gggtgatttagggtcaattttgacctaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttcacatattttttgttttctt 27095786  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  27095787 tcgtttgttttt 27095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 44942267 - 44942378
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    ||||||||||||||||| ||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||| |||||||||    
T  44942267 gggtgatttatggtcaattttgacccaaaaatcacccctccgagttgttttttcttctatcctaattgaataagtgatttcacatattttatgttttctt 44942366  T
Q  558 acgtttgttttt 569  Q
      ||||||||||    
T  44942367 ttgtttgttttt 44942378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 454 - 554
Target Start/End: Complemental strand, 17268267 - 17268167
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||||||||| |||||||||||||||| |||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17268267 agaggggtgatttatggtcaattttgacccaaaaatcatcccttcgagttgtttttccttctatcctaattgaataagtgatttcacatattttctgttt 17268168  T
Q  554 t 554  Q
    |    
T  17268167 t 17268167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 9978812 - 9978697
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||| | | ||||||||| || |||| ||||||||||| ||||||||||||||||||||||    
T  9978812 agaggggtgatttaaggtcaattttgacccaaaaatcaccccttcaaattgtttttccttttatcttaattgaataaatgatttcacatattttctgttt 9978713  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  9978712 tctttcgtttgttttt 9978697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 455 - 569
Target Start/End: Complemental strand, 13740801 - 13740688
Alignment:
Q  455 gaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    ||||| |||||||||||||  |||||||||||||||||| |||| | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  13740801 gagggatgatttatggtcat-tttgacccaaaaatcaccactccgaattgtttttccttctatcctaattgaataagtgatttcatatattttctgtttt 13740703  T
Q  555 cttacgtttgttttt 569  Q
    ||| |||||||||||    
T  13740702 ctttcgtttgttttt 13740688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 454 - 562
Target Start/End: Complemental strand, 11938002 - 11937893
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcatt-ctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||||| ||||    
T  11938002 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttcctttctatcctaattgaataagtgatttcacatattttttgtt 11937903  T
Q  553 ttcttacgtt 562  Q
    ||||| ||||    
T  11937902 ttctttcgtt 11937893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 5754266 - 5754381
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||||||||||||| |||||| | ||||||||| |||||||||| |||||||| |||||||||||||||| |||||    
T  5754266 agaggggtgatttagggtcaattttgacccaaaaatcatccctccgaattgtttttccttctatcctagttgaataaatgatttcacatattttttgttt 5754365  T
Q  554 tcttacgtttgttttt 569  Q
    |||| | |||||||||    
T  5754366 tctttcatttgttttt 5754381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 38535448 - 38535333
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||| |||||||   | || |||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  38535448 agaggggtgatttagggtcaattttgacccaaaaagcacccctttgaattttttttccttctatcataattgaataagtgatttcacatattttctgttt 38535349  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  38535348 tctttcgtttgttttt 38535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 15919852 - 15919966
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||||||||||  ||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||||||||||   ||    
T  15919852 agaggggtgatttagagtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataaatgatttcacatattttc-aatt 15919950  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  15919951 tctttcgtttgttttt 15919966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 18089535 - 18089432
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||| ||||||||||| ||||| | ||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  18089535 agaggggtgatttagggtcaattttgatccaaaaatcactcctccgaattgttttttcttatatcctaattgaataagtgatttcacatattttctgttt 18089436  T
Q  554 tctt 557  Q
    ||||    
T  18089435 tctt 18089432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 33012059 - 33012170
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| ||||||||||||||||| | ||| | ||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||    
T  33012059 gggtgatttagggtcaattttgacccaaaaatcactcatccgaattgtttttccttctattctaattgaataagtgatttcacatattttcagttttgtt 33012158  T
Q  558 acgtttgttttt 569  Q
     |||||||||||    
T  33012159 tcgtttgttttt 33012170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 461 - 569
Target Start/End: Original strand, 35333490 - 35333598
Alignment:
Q  461 tgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacg 560  Q
    ||||||| | |||| |||||||||||||||||||||   | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||    
T  35333490 tgatttaggatcaattttgacccaaaaatcacccctaagaattgtttttcctgctatcctaattgaataagtgatttcacatattttctgttttctttcg 35333589  T
Q  561 tttgttttt 569  Q
    ||| |||||    
T  35333590 tttattttt 35333598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 455 - 569
Target Start/End: Original strand, 4739310 - 4739422
Alignment:
Q  455 gaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtttt 554  Q
    ||||||||||||| ||||||  ||||||| |||||||||||||| | ||||||||| ||| ||||||||| ||||||| |||||||||||||||||||||    
T  4739310 gaggggtgatttagggtcaa--ttgaccccaaaatcacccctccgagttgtttttccttccatcctaattaaataagtaatttcacatattttctgtttt 4739407  T
Q  555 cttacgtttgttttt 569  Q
     || |||||||||||    
T  4739408 tttccgtttgttttt 4739422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 7073091 - 7072976
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||| ||| | | | ||| ||||| ||||||||||||||||||||| | |||||| |||||||||||    
T  7073091 agaggggtgatttagggtcaattttgacccaaaaatcgccctttcgaattggttttccttctatcctaattgaataagtaacttcacaaattttctgttt 7072992  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  7072991 tctttcgtttgttttt 7072976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 31908959 - 31908844
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||| |||||||  ||||| ||||| ||||||||||||| ||| | ||||||||  || ||||||| |||||||||||||||||||||||||||||||    
T  31908959 agagggatgatttagagtcaattttgatccaaaaatcacccttccgaattgttttttcttttatcctagttgaataagtgatttcacatattttctgttt 31908860  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  31908859 tctttcgtttgttttt 31908844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 36867986 - 36868101
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| |||||| |||||||||||||||  | ||||||||| |||||| |||||| |||||| |||||||||||||||||  ||    
T  36867986 agaggggtgatttagggtcaattttgactcaaaaatcacccctctgaattgtttttccttctattctaattcaataagcgatttcacatattttctactt 36868085  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  36868086 tctttcgtttgttttt 36868101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 4604446 - 4604335
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    |||||||||| |||||| |||||||||||||| || | | | | ||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||    
T  4604446 gggtgatttaaggtcaattttgacccaaaaattactcattcgagttgtttttccttctattctaattgaataagtgatttcacatattttctgctttctt 4604347  T
Q  558 acgtttgttttt 569  Q
     || ||||||||    
T  4604346 tcgattgttttt 4604335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 34416904 - 34416789
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||| |||| || |||||| ||||||| |||||||| |||||| | ||||||||| || |||||||||||||||||||||||||||||||||| ||||    
T  34416904 agagggatgatctaaggtcaattttgaccaaaaaatcatccctccgaattgtttttccttatatcctaattgaataagtgatttcacatattttcagttt 34416805  T
Q  554 tcttacgtttgttttt 569  Q
    | ||  ||||||||||    
T  34416804 ttttttgtttgttttt 34416789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 32015198 - 32015317
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaat----tgaataagtgatttcacatattttct 549  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||| || |||| ||||    | ||||||||||||||||||||||||    
T  32015198 agaggggtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttatatcataattcaataaataagtgatttcacatattttct 32015297  T
Q  550 gttttcttacgtttgttttt 569  Q
    |||||| | | |||||||||    
T  32015298 gttttcattcatttgttttt 32015317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 469 - 569
Target Start/End: Complemental strand, 10287133 - 10287034
Alignment:
Q  469 ggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgtttt 568  Q
    |||||| ||||||  ||||||||||||||| | |||  |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10287133 ggtcaattttgacataaaaatcacccctccgaattgcatttcttt-tatcctaattgaataagtgatttcacatattttctgttttctttcgtttgtttt 10287035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 464 - 569
Target Start/End: Original strand, 34470952 - 34471059
Alignment:
Q  464 tttatggtcaaatttgacccaaaaatcac--ccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgt 561  Q
    |||| |||||| |||||||||||||||||  |||||| | |||||| || ||||||| ||||||||| |||||||||||||||||||| ||||||| |||    
T  34470952 tttagggtcaattttgacccaaaaatcacacccctccgaattgtttatctttctatcttaattgaatcagtgatttcacatattttctattttctttcgt 34471051  T
Q  562 ttgttttt 569  Q
    ||||||||    
T  34471052 ttgttttt 34471059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 34963208 - 34963106
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||| ||||  |||||| ||||||| ||||||||||| ||  ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  34963208 agaggggtaattttgggtcaattttgacctaaaaatcaccc-tctgatttgtttttccttctaccctaattgaataagtgatttcacattttttctgttt 34963110  T
Q  554 tctt 557  Q
    ||||    
T  34963109 tctt 34963106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 454 - 553
Target Start/End: Complemental strand, 38384585 - 38384486
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||  |||||| |||||||||||||||||  |||| ||||||||||| || || ||||||||||||||||||||||||| |||| |||||    
T  38384585 agaggggtgattttgggtcaattttgacccaaaaatcacatctccgatttgtttttccttataccctaattgaataagtgatttcacattttttttgttt 38384486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 500 - 570
Target Start/End: Complemental strand, 4426755 - 4426685
Alignment:
Q  500 atttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgtttttt 570  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  4426755 atttgtttttccttctatcctaattgaataaatgatttcacatattttctgttttctttcatttgtttttt 4426685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 13879157 - 13879034
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt--------cattctatcctaattgaataagtgatttcacatatt 545  Q
    |||||| ||||||| |||||| |||||||||| |||||||||||| | ||||||||        | ||||||||||||||||||||||||||||||||||    
T  13879157 agagggatgatttagggtcaattttgacccaataatcacccctccgagttgttttttttttcttccttctatcctaattgaataagtgatttcacatatt 13879058  T
Q  546 ttctgttttcttacgtttgttttt 569  Q
    |||||||| ||| ||||| |||||    
T  13879057 ttctgtttcctttcgtttattttt 13879034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 14019282 - 14019159
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt--------cattctatcctaattgaataagtgatttcacatatt 545  Q
    |||||| ||||||| |||||| |||||||||| |||||||||||| | ||||||||        | ||||||||||||||||||||||||||||||||||    
T  14019282 agagggatgatttagggtcaattttgacccaataatcacccctccgagttgttttttttttcttccttctatcctaattgaataagtgatttcacatatt 14019183  T
Q  546 ttctgttttcttacgtttgttttt 569  Q
    |||||||| ||| ||||| |||||    
T  14019182 ttctgtttcctttcgtttattttt 14019159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 28231240 - 28231125
Alignment:
Q  454 agaggggtgatttatgg-tcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgtt 552  Q
    ||||||||||||| ||| | ||| ||||||| ||| |||||| ||| | ||||||||| ||||||| |  ||||||||||||||||||||||||||||||    
T  28231240 agaggggtgatttttgggttaaaattgaccctaaa-tcacccatccgaattgtttttccttctatcttggttgaataagtgatttcacatattttctgtt 28231142  T
Q  553 ttcttacgtttgttttt 569  Q
    ||||| |||||||||||    
T  28231141 ttctttcgtttgttttt 28231125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 28262032 - 28261916
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatc-----ctaattgaataagtgatttcacatattttctgtt 552  Q
    |||||||||| |||||| ||||||||||||||||| | ||| | ||||||||| |||||||      |||||||||| ||||||| ||||||||||||||    
T  28262032 gggtgatttagggtcaattttgacccaaaaatcactcatccgaattgtttttccttctatcataatttaattgaatatgtgattttacatattttctgtt 28261933  T
Q  553 ttcttacgtttgttttt 569  Q
    ||||| |||||||||||    
T  28261932 ttctttcgtttgttttt 28261916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 569
Target Start/End: Original strand, 32314468 - 32314535
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  32314468 ttgttttttcttctatcctaattgaataaatgatttcacatattttctgttttctttcgtttgttttt 32314535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 464 - 569
Target Start/End: Original strand, 4732059 - 4732163
Alignment:
Q  464 tttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgttt 563  Q
    |||| |||||| |||||| |||||||||||| |  || |||  |||| |||||||||||||||||||||||||||||||| ||| |||||| || |||||    
T  4732059 tttagggtcaattttgactcaaaaatcacccttgttagttgcatttccttctatcctaattgaataagtgatttcacatactttttgtttt-tttcgttt 4732157  T
Q  564 gttttt 569  Q
    ||||||    
T  4732158 gttttt 4732163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 569
Target Start/End: Complemental strand, 11798653 - 11798544
Alignment:
Q  460 gtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttctta 558  Q
    ||||||||||||||| |||||||| ||||||||||||||   ||| ||||| || |||||||||| ||||||| |||| ||||||||||  ||||||||     
T  11798653 gtgatttatggtcaattttgaccc-aaaatcacccctccatgttgcttttccttatatcctaattaaataagtaatttccacatatttttagttttcttt 11798555  T
Q  559 cgtttgttttt 569  Q
     ||||||||||    
T  11798554 tgtttgttttt 11798544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 458 - 557
Target Start/End: Complemental strand, 17767690 - 17767591
Alignment:
Q  458 gggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttct 556  Q
    ||||||||||  ||||| ||||||||| || |||||||| | | ||||||||| || |||||||||| |||||||||||| ||||||||||| |||||||    
T  17767690 gggtgatttagagtcaattttgacccagaa-tcaccccttcgagttgtttttccttatatcctaattaaataagtgatttccacatattttcagttttct 17767592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 12891232 - 12891188
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcc 498  Q
    |||||||||||||| |||||| |||||||||||||||||||||||    
T  12891232 agaggggtgatttagggtcaattttgacccaaaaatcacccctcc 12891188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 6431483 - 6431415
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||| || ||| |||||| |||||||||||| ||||||||||| ||||||||  ||||||||||    
T  6431483 ttgtttttccttatattctaattaaataagtgatttccacatattttcagttttcttttgtttgttttt 6431415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 529 - 569
Target Start/End: Complemental strand, 12891187 - 12891147
Alignment:
Q  529 aagtgatttcacatattttctgttttcttacgtttgttttt 569  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  12891187 aagtgatttcacatattttctattttctttcgtttgttttt 12891147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 569
Target Start/End: Original strand, 17792483 - 17792567
Alignment:
Q  486 aaatcacccctcctatttgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttcttacgtttgttttt 569  Q
    |||||||||||||   ||||||||| |||| | ||| || |||||| ||||| ||||||||||| |||||||| |||||||||||    
T  17792483 aaatcacccctccatattgtttttctttctcttctagttaaataagcgattttcacatattttcagttttctttcgtttgttttt 17792567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 8799510 - 8799548
Alignment:
Q  353 acataatttaaagtgaagcgaccaaataactcattataa 391  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  8799510 acataatttaaaatgaagtgaccaaataactcattataa 8799548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 569
Target Start/End: Complemental strand, 20607416 - 20607340
Alignment:
Q  494 cctcctatttgtttttcattctatcctaattgaataagtgattt-cacatattttctgttttcttacgtttgttttt 569  Q
    ||||| ||||||||||| |||| |  || || | |||||||||| ||||||||||| |||||||| |||||||||||    
T  20607416 cctccgatttgtttttctttcttttttagttaactaagtgattttcacatattttcagttttctttcgtttgttttt 20607340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 1229 - 1114
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||||||||| |||||| ||||||||||||||||||||| | | ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  1229 agaggggtgatttaaggtcaattttgacccaaaaatcacccctgcgaattgtttttccttctaccctaattgaataagtgatttcacatattttcagttt 1130  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  1129 tctttcgtttgttttt 1114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 1 - 56
Alignment:
Q  502 ttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttctt 557  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  1 ttgtttttccttctatcttaattgaataagtgatttcacatattttttgttttctt 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 469 - 569
Target Start/End: Complemental strand, 7252 - 7152
Alignment:
Q  469 ggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacgtttgtttt 568  Q
    |||| ||||||||||||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7252 ggtccaatttgacccaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgatttcacatattttctgttttctttcgtttgtttt 7153  T
Q  569 t 569  Q
    |    
T  7152 t 7152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 74142 - 74257
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||| ||||||||   |||| ||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  74142 agaggagtgatttagaatcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttcacatattttctgttt 74241  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  74242 tctttcgtttgttttt 74257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 2878 - 2995
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgttttt--cattctatcctaattgaataagtgatttcacatattttctgt 551  Q
    |||||||||||||| |||||| |||||||||| |||||||||||| | ||||||||  | ||||||||||||||||||||||||||||||||||||||||    
T  2878 agaggggtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttccttctatcctaattgaataagtgatttcacatattttctgt 2977  T
Q  552 tttcttacgtttgttttt 569  Q
    || ||| |||||||||||    
T  2978 ttcctttcgtttgttttt 2995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 459 - 569
Target Start/End: Original strand, 35065 - 35177
Alignment:
Q  459 ggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcac--atattttctgttttct 556  Q
    ||||||||| |||||| ||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  35065 ggtgatttagggtcaattttgacccaaaaatcacccatccgagttgtttttccttctatcctaattgaataagtgatttcacatatattttctgttttct 35164  T
Q  557 tacgtttgttttt 569  Q
    | |||||||||||    
T  35165 ttcgtttgttttt 35177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 404401 - 404286
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    ||||||| |||||| |||||| ||||| ||||||||||||| ||| | | ||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  404401 agaggggcgatttaaggtcaattttgatccaaaaatcacccatccgaatagtttttcttgctatcctaattgaataagtgatttcacatattttctgttt 404302  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  404301 tcttccgtttgttttt 404286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 456 - 568
Target Start/End: Complemental strand, 2557 - 2446
Alignment:
Q  456 aggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttc 555  Q
    |||||||||||| |||||  ||||||||||||||||||| ||  | ||||||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  2557 aggggtgatttagggtcatttttgacccaaaaatcaccc-tctgagttgtttttccttctatcataatcgaataagtgatttcacatattttctgttttc 2459  T
Q  556 ttacgtttgtttt 568  Q
    || ||||||||||    
T  2458 tttcgtttgtttt 2446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 569
Target Start/End: Complemental strand, 13392 - 13273
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattct----atcctaattgaataagtgatttcacatattttct 549  Q
    |||| ||||||||| |||||| ||||| ||||||||||||||||| | ||||||||  || |    ||||||||||||||||||||||||||| ||||||    
T  13392 agagaggtgatttagggtcaattttgatccaaaaatcacccctccgaattgtttttttttttttttatcctaattgaataagtgatttcacatcttttct 13293  T
Q  550 gttttcttacgtttgttttt 569  Q
    ||||||||  ||||||||||    
T  13292 gttttcttttgtttgttttt 13273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 454 - 569
Target Start/End: Original strand, 1553 - 1667
Alignment:
Q  454 agaggggtgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttt 553  Q
    |||||||| ||||| | || | |||||||||||||||||| |||  |||| | |||| ||||| | |||||||||||||||||||||||||||| |||||    
T  1553 agaggggtaatttaggttccattttgacccaaaaatcacctctctgattt-tgtttccttctaccataattgaataagtgatttcacatattttatgttt 1651  T
Q  554 tcttacgtttgttttt 569  Q
    |||| |||||||||||    
T  1652 tctttcgtttgttttt 1667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 461 - 569
Target Start/End: Complemental strand, 4202 - 4095
Alignment:
Q  461 tgatttatggtcaaatttgacccaaaaatcacccctcctatttgtttttcattctatcctaattgaataagtgatttcacatattttctgttttcttacg 560  Q
    ||||||| |||||| |||||| |||||||||| |||   | |||| || | ||||||||||||| |||||||||||||||||||||| ||||||||| ||    
T  4202 tgatttagggtcaattttgacacaaaaatcactcctttgagttgtcttcc-ttctatcctaattaaataagtgatttcacatattttatgttttctttcg 4104  T
Q  561 tttgttttt 569  Q
    |||||||||    
T  4103 tttgttttt 4095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University