View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6944_low_16 (Length: 216)
Name: NF6944_low_16
Description: NF6944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6944_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 47419515 - 47419319
Alignment:
| Q |
13 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
112 |
Q |
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| T |
47419515 |
gagatgaaatgcccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47419416 |
T |
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| Q |
113 |
tagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct |
209 |
Q |
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| T |
47419415 |
tagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct |
47419319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 47391152 - 47390956
Alignment:
| Q |
13 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
112 |
Q |
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| T |
47391152 |
gagatgaaatacctaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggtagg |
47391053 |
T |
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| Q |
113 |
tagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct |
209 |
Q |
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| T |
47391052 |
cagaatagatgatttttcctaaggtggttagagatagatttcaacgttatgctaagaaccatcctttttattgcagacaaaaaccaatacaggttct |
47390956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 47421987 - 47421775
Alignment:
| Q |
13 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
112 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47421987 |
gagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47421888 |
T |
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| Q |
113 |
tagaatag--------------------atgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaa |
192 |
Q |
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|||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||| |
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| T |
47421887 |
tagaatagatagtttactttatcttacaatgtgttttcttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttctt----acaa |
47421792 |
T |
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| Q |
193 |
aaaccaacacaggttct |
209 |
Q |
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||||||| ||||||||| |
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| T |
47421791 |
aaaccaatacaggttct |
47421775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 47408286 - 47408183
Alignment:
| Q |
13 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
112 |
Q |
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||||||||||| ||||||| || | |||| ||||| ||||||||||||||| |||||||||| |||||| ||||||| || ||||||| ||||||||||| |
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| T |
47408286 |
gagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggtagg |
47408187 |
T |
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| Q |
113 |
taga |
116 |
Q |
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|||| |
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| T |
47408186 |
taga |
47408183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 47424696 - 47424609
Alignment:
| Q |
36 |
tttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatg |
123 |
Q |
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|||||||||||||||||||| ||||||||| | |||||||||| | ||||| || ||||||| ||||||||| ||||| |||||| |
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| T |
47424696 |
tttgtacggcttatgaaaggcattgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggtacgtagattagatg |
47424609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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