View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6944_low_17 (Length: 216)
Name: NF6944_low_17
Description: NF6944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6944_low_17 |
 | |
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| [»] scaffold1961 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 15195876 - 15195694
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
15195876 |
gaacctgtggagcgaaaatgttatttattcaaaccagataaggactcgattgtcgaatacgctttgggaattagtatgcaagtactatgctggagaagtt |
15195777 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgagaatcc |
193 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
15195776 |
gttaacataaaagtgattagaaatataacaaatatgctaatggatttaggaccttccgtttatgtgcaagaatttgagaatcc |
15195694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 15216294 - 15216112
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
15216294 |
gaacctgtggagcgaaaatgttatttattcaaaccagataaggactcgattgtcgaatacgctttgggaattagtatgcaagtactatgctggagaagtt |
15216195 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgagaatcc |
193 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
15216194 |
gttaacataaaagtgattagaaatataacaaatatgctaatggatttaggaccttccgtttatgtgcaagaatttgagaatcc |
15216112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 15196524 - 15196340
Alignment:
| Q |
14 |
cctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagttgtt |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
15196524 |
cctgtggagagaaaatgttatttattcaaaccagataaggactcgattgtcgaatatgcttttggtattagtatgcaaggactatgctggagaagttgtt |
15196425 |
T |
|
| Q |
114 |
aacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgagaatccattgc |
198 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
15196424 |
gatagaaaactgattagatatataacaaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgc |
15196340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 15216942 - 15216758
Alignment:
| Q |
14 |
cctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagttgtt |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15216942 |
cctgtggagagaaaatgttatttattcaaaccagataaggactcgattgtcgaatatgcttttggtattagtatgcaaggactatgctggagaagttgtt |
15216843 |
T |
|
| Q |
114 |
aacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgagaatccattgc |
198 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
15216842 |
gatagaaaactgattagatatataacaaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgc |
15216758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1961 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: scaffold1961
Description:
Target: scaffold1961; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 225 - 38
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||| |||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
225 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgatttttgaatatgcttttgggattaatatgcaaggactatgctgaggaagtc |
126 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgagaatccattgc |
198 |
Q |
| |
|
||||| | ||||||||||||| | ||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
125 |
gttaataaaaaactgattagaaaaataacgaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgc |
38 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 14661151 - 14661329
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || |||| |||||| ||| || |||| | |
|
|
| T |
14661151 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagat |
14661250 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgaga |
189 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| |||||||| |||| | ||||||| ||||||| |||||||||||||| |
|
|
| T |
14661251 |
gttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagaatttgaga |
14661329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 14652716 - 14652894
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||| ||| || |||| | |
|
|
| T |
14652716 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgattgtcgaatacgcttttggagtttgtatttaaggagcgtgccggggaagat |
14652815 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgaga |
189 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| ||||| ||||||| | ||||||| ||||||| ||||| |||||||| |
|
|
| T |
14652816 |
gttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgaga |
14652894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 14627299 - 14627477
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |||| || || ||| || |||| | |
|
|
| T |
14627299 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggaatcgattgtcgaatacgcttttggagtttgtatttaaagagcgtgccggggaagat |
14627398 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgaga |
189 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| |||||||| |||| | ||||||| ||||||| ||||| |||||||| |
|
|
| T |
14627399 |
gttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgaga |
14627477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 14750348 - 14750170
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| |||||| ||||||||||||||||||| || |||| |||||| |||||| |||| | |
|
|
| T |
14750348 |
gaacctgtggagagagaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagat |
14750249 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgaga |
189 |
Q |
| |
|
||||| ||| ||| ||||||| || || |||| ||||||||||||| | |||| | ||||||| | |||||||||||| |
|
|
| T |
14750248 |
gttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgaga |
14750170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 14765430 - 14765248
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||| |||||| ||| ||||| |||||||||||||||| || || ||| || |||||| |
|
|
| T |
14765430 |
gaacctgtggagagaaaatgttcttcattcaaaccagataaggactcgactgttgaatatgcttttggaattagtacacagtgagcgtgccggcgaagtt |
14765331 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgagaatcc |
193 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| |||||||| ||| || ||||||||||||||| | |||||||||||||||| |
|
|
| T |
14765330 |
gttaatagaggactgattagaagtataacaaagatgctaattgatacaggtccttccgtttatgaggaagaatttgagaatcc |
14765248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 14758270 - 14758092
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
||||||||||| || ||||||||||| ||||| ||||| || |||||| ||||||||| |||||||||||||||||||||||| |||||| |||| | |
|
|
| T |
14758270 |
gaacctgtggacagagaatgttatttactcaaaacagatcaggactcgactgtcgaatatgcttttggaattagtatgcaaggaacgtgctggggaagat |
14758171 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgaga |
189 |
Q |
| |
|
||||| | | ||||||||| | |||| ||||| ||||||||||||| | || |||| ||||| | ||||||||| |||| |
|
|
| T |
14758170 |
gttaatatagaactgattaaaaatattacaaagatgctaatggatttaggttcttctgtttaagagcaagaattcgaga |
14758092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 17684110 - 17683932
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||| |||| | ||||||||||||||||||| || |||| ||||| | ||| || |||| | |
|
|
| T |
17684110 |
gaacctgtggagagaaattgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtatttaaggagtgtgccggggaagat |
17684011 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgaga |
189 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| |||||||| |||| | ||||||| ||||||| |||||||||||||| |
|
|
| T |
17684010 |
gttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagaatttgaga |
17683932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 17691036 - 17690858
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| || |||| |||||| ||| || |||| | |
|
|
| T |
17691036 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggaatcgattgtcgaatatgcttttggagtttgtattcaaggagcgtgccggggaagat |
17690937 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgaga |
189 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| |||||||| |||| | ||||||| ||||||| ||||| |||||||| |
|
|
| T |
17690936 |
gttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgaga |
17690858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 17563169 - 17563351
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||| |||||| ||| ||||| |||||||||||||||| ||| || ||| || |||||| |
|
|
| T |
17563169 |
gaacctgtggagagaaaatgttcttcattcaaaccagataaggactcgactgttgaatatgcttttggaattagtacgcagtgagcgtgccggcgaagtt |
17563268 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgagaatcc |
193 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| |||||||| ||| || ||||||||||||||| | |||||||||||||||| |
|
|
| T |
17563269 |
gttaatagaggactgattagaagtataacaaagatgctaattgatacaggtccttccgtttatggggaagaatttgagaatcc |
17563351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 17702194 - 17702016
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||| || || ||| || |||| | |
|
|
| T |
17702194 |
gaacctgtggagagaaaatgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtacttaaagagcgtgccggggaagat |
17702095 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgaga |
189 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| |||||||| |||| | ||||||| ||||||| ||||| |||||||| |
|
|
| T |
17702094 |
gttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgaga |
17702016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 17570265 - 17570443
Alignment:
| Q |
11 |
gaacctgtggagcgaaaatgttatttattcaaaccagataagcactcgattgtcgaatacgcttttggaattagtatgcaaggactatgctggagaagtt |
110 |
Q |
| |
|
||||||||||| || ||||||||||| ||||| ||||| || |||||| ||||||||| |||||||||||||||||||||||| |||||| |||| | |
|
|
| T |
17570265 |
gaacctgtggacagagaatgttatttactcaaaacagatcaggactcgactgtcgaatatgcttttggaattagtatgcaaggaacgtgctggggaagat |
17570364 |
T |
|
| Q |
111 |
gttaacagaaaactgattagatatataacaaatatgctaatggattcacgtccttccgtttatgtgcaagaatttgaga |
189 |
Q |
| |
|
||||| | | ||||||||| | |||| ||||| ||||||||||||| | || |||| ||||||| ||||||||| |||| |
|
|
| T |
17570365 |
gttaatatagaactgattaaaaatattacaaagatgctaatggatttaggttcttctgtttatgagcaagaattcgaga |
17570443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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