View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6944_low_2 (Length: 443)
Name: NF6944_low_2
Description: NF6944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6944_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Original strand, 35211712 - 35212123
Alignment:
| Q |
15 |
ctgtgctgcaaataaaccagttaaaggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcaggaccaactttccaagcaaacaac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35211712 |
ctgtgctgcaaataaaccagttaaaggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcaggaccaactttccaagcaaacaac |
35211811 |
T |
|
| Q |
115 |
aatataggaaagttccaaggtatgatttgtcctgcaaccccaattggttcatgcaatacttgtacatgataattcccatcagctggaaccgtgagaccat |
214 |
Q |
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| T |
35211812 |
aatataggaaagttccaaggtatgatttgtcctgcaaccccaattggttcatgcaatacttgtacatgataattcccatcagctggaactgtgagaccat |
35211911 |
T |
|
| Q |
215 |
gtattttatctgcccaacctgaataaattgcaggtcgaatatcaccaaaaatcagtagtatataaatgaagaaagaaatgaacgtcttattggtttcact |
314 |
Q |
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| T |
35211912 |
gtattttatctgcccaacctgaataaattgcaggtcgaatatcaccaaaaatcagtagtatataaatgaagagagaaatgaacgtcttattggtttcact |
35212011 |
T |
|
| Q |
315 |
gttctgtctcaccagcatagtagcggagcaaacgtacaaacataggcacttcaatatttacagcttgctcataaagcttgccgttattccatgtttccaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35212012 |
gttctgtctcaccagcatagtagcggagcaaacgtacaaacataggcacttcaatatttacagcttgctcataaagcttgccgttattccatgtttccaa |
35212111 |
T |
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| Q |
415 |
tgccgcaagttc |
426 |
Q |
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| T |
35212112 |
tgccgcaagttc |
35212123 |
T |
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Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 43999617 - 43999812
Alignment:
| Q |
40 |
ggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcaggaccaactttccaagcaaacaacaatataggaaagttccaaggtatga |
139 |
Q |
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| T |
43999617 |
ggtgtttgctcagcagtcttgaggacaatggtattaccacatgctagagctggtccaactttccaagcaaacataagtagaggaaaattccaaggtataa |
43999716 |
T |
|
| Q |
140 |
tttgtcctgcaaccccaattggttcatgcaatacttgtacatgataattcccatcagctggaaccgtgagaccatgtattttatctgcccaacctg |
235 |
Q |
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| T |
43999717 |
tttgtcctgctacaccaattggttcatgcaatgtctggacatgataatctccatcagccgggactgtcagcccatgaattttatctgcccaacctg |
43999812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 26895073 - 26894878
Alignment:
| Q |
40 |
ggtgtttgttcagcagtctttactacaacagtattaccacatgctaatgcaggaccaactttccaagcaaacaacaatataggaaagttccaaggtatga |
139 |
Q |
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||||| |||||||| || |||| ||||| || || ||||| || ||||| || ||||| ||||||||||||| | | ||| |||||||| || |||| |
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| T |
26895073 |
ggtgtctgttcagctgtttttagaacaacggtgttgccacacgccaatgcgggtccaaccttccaagcaaacatgagaagagggaagttccatggaatga |
26894974 |
T |
|
| Q |
140 |
tttgtcctgcaaccccaattggttcatgcaatacttgtacatgataattcccatcagctggaaccgtgagaccatgtattttatctgcccaacctg |
235 |
Q |
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| T |
26894973 |
tttgaccagcaacgccaatcggttcgtgcaatgtctgcacatgatatggtccatcagctggaactgtgagcccatgaatcttatctgcccaacctg |
26894878 |
T |
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