View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6944_low_4 (Length: 339)
Name: NF6944_low_4
Description: NF6944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6944_low_4 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 51351037 - 51350711
Alignment:
| Q |
16 |
cacttggtgggtggtgaaatcaaaggctgtgttcatgctctaggagctgatcaatttgatgacaagaatccaaaggatcgtctccaactagctagcttct |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51351037 |
cacttggtgg-tggtgaaatcaaaggctgtgttcctgctctaggagctgatcaatttgatgacaagaatccaaaggaccgtctccaactagctagcttct |
51350939 |
T |
|
| Q |
116 |
ttgatt----ggtttctgttagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctcttatatgc |
211 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51350938 |
ttgattaattggtttttgttagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctcttatatgc |
51350839 |
T |
|
| Q |
212 |
ttctgctgcactaatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagggaccgtttctt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51350838 |
ttctgctgcactaatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagggaccgtttctt |
51350739 |
T |
|
| Q |
312 |
cattcgcctccatatgttttatatatag |
339 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
51350738 |
cattcgcctccatatgttttatatatag |
51350711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 51360406 - 51360104
Alignment:
| Q |
16 |
cacttggtgggtggtgaaatcaaaggctgtgttcatgctctaggagctgatcaatttgatgacaagaatccaaaggatcgtctccaactagctagcttct |
115 |
Q |
| |
|
|||||||||| ||||| ||||| ||| ||||||| |||||||||||| |||||||||||||| | ||||||||| || |||||||||||| ||||||| |
|
|
| T |
51360406 |
cacttggtgg-tggtggaatcagaggttgtgttcctgctctaggagcagatcaatttgatgatatgaatccaaaagaatatctccaactagcaagcttct |
51360308 |
T |
|
| Q |
116 |
ttgattggtttctgtt-------------------agcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttat |
196 |
Q |
| |
|
| |||||||| |||| |||||||||| ||| ||||||||| ||||||| || ||| | |||||||||||||||||||| |
|
|
| T |
51360307 |
tcaattggtttttgtttagtattacaattggtgctagcttaggtgtcacttttgtagtttatgttagcacaatcttcgattggtacaaaggttttcttat |
51360208 |
T |
|
| Q |
197 |
atctctcttatatgcttctgctgcactaatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtatttta |
296 |
Q |
| |
|
|||||||| || | || | ||||||| |||||||||||| ||||||||||||||||| ||| | | ||| || | ||||||||||||| |||||||| |
|
|
| T |
51360207 |
atctctctcatgttctgcctctgcacttatttgcattgttgctggaaagagattctatcgtaaacgaattcctggggagagtccattgttgagtatttta |
51360108 |
T |
|
| Q |
297 |
cagg |
300 |
Q |
| |
|
|||| |
|
|
| T |
51360107 |
cagg |
51360104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University