View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6944_low_6 (Length: 325)
Name: NF6944_low_6
Description: NF6944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6944_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 198 - 312
Target Start/End: Original strand, 4537164 - 4537278
Alignment:
| Q |
198 |
agggttaaattgaattgcaattgcgtagattctaacactgaaactaacnnnnnnnnnnnnnngataccacagatctatgaaacaaaatggacaaaccttg |
297 |
Q |
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| T |
4537164 |
agggttaaattgaattgcaattgcgtagattctaacactgaaactaacaaaaatgaaaaaaagataccacagatctatgaaacaaaatggacaaaccttg |
4537263 |
T |
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| Q |
298 |
ataactttctcacag |
312 |
Q |
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||||||||||||||| |
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| T |
4537264 |
ataactttctcacag |
4537278 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 4537049 - 4537078
Alignment:
| Q |
83 |
catatacaagttgcaacagtgcagtgaagc |
112 |
Q |
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| T |
4537049 |
catatacaagttgcaacagtgcagtgaagc |
4537078 |
T |
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