View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6944_low_7 (Length: 322)
Name: NF6944_low_7
Description: NF6944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6944_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 52577447 - 52577183
Alignment:
| Q |
21 |
tcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttctcatttgaaattaannnnnnnagggagtactgtttgaagatgat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
52577447 |
tcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttctcatttgaaattaatttttttaaggagtactgtttgaagatgat |
52577348 |
T |
|
| Q |
121 |
ttaaatgtaaacaattatcttacaaggttttatttttcgtatgtaaacaacttattctctacagactgtgactgatagttggttagagaatgctgccaat |
220 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52577347 |
ttaaatgtaaacaattatcttactaggttttatttttggtatgtaaacaacttattctctacagactgtgacggatagttggttagagaatgctgccaat |
52577248 |
T |
|
| Q |
221 |
ggtctgatgggaaagcaggtatcaagttcatcttgtgcatttaatttaattgccacaggttctgc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
52577247 |
ggtctgatgggaaagcaggtatcaagttcatcttgtgcatgtaatttaattgccacaagttctgc |
52577183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University