View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6945_high_10 (Length: 235)

Name: NF6945_high_10
Description: NF6945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6945_high_10
NF6945_high_10
[»] chr1 (23 HSPs)
chr1 (12-176)||(3385444-3385608)
chr1 (12-176)||(24883102-24883265)
chr1 (12-164)||(33400990-33401141)
chr1 (12-147)||(34970118-34970253)
chr1 (12-164)||(27171815-27171967)
chr1 (12-138)||(13946964-13947090)
chr1 (12-166)||(33156588-33156741)
chr1 (12-166)||(37948802-37948956)
chr1 (12-176)||(39781074-39781232)
chr1 (15-176)||(49776823-49776983)
chr1 (12-132)||(38338800-38338920)
chr1 (31-138)||(43297003-43297110)
chr1 (12-89)||(42082904-42082984)
chr1 (69-166)||(49777013-49777110)
chr1 (69-166)||(33400869-33400968)
chr1 (69-164)||(34970001-34970096)
chr1 (73-138)||(37948982-37949047)
chr1 (74-166)||(5771922-5772014)
chr1 (69-132)||(38338715-38338778)
chr1 (72-164)||(3385324-3385419)
chr1 (69-138)||(13947112-13947181)
chr1 (69-138)||(27171989-27172058)
chr1 (104-176)||(24882975-24883047)
[»] chr2 (19 HSPs)
chr2 (12-163)||(21265695-21265846)
chr2 (12-176)||(22563214-22563378)
chr2 (12-160)||(29892820-29892967)
chr2 (26-166)||(20296276-20296416)
chr2 (12-166)||(17200211-17200364)
chr2 (16-157)||(156971-157111)
chr2 (12-176)||(34645551-34645714)
chr2 (12-138)||(12232695-12232821)
chr2 (12-89)||(13979723-13979800)
chr2 (69-166)||(12232577-12232673)
chr2 (35-138)||(8237886-8237988)
chr2 (69-176)||(17200082-17200189)
chr2 (69-166)||(21265577-21265673)
chr2 (69-176)||(29892989-29893094)
chr2 (69-176)||(22563400-22563507)
chr2 (83-176)||(4371458-4371551)
chr2 (69-176)||(34645736-34645843)
chr2 (69-163)||(20296606-20296700)
chr2 (128-166)||(33491417-33491455)
[»] chr8 (15 HSPs)
chr8 (12-166)||(14999185-14999339)
chr8 (12-176)||(41721960-41722124)
chr8 (23-176)||(43801615-43801768)
chr8 (12-147)||(6911162-6911297)
chr8 (12-164)||(16324977-16325131)
chr8 (12-166)||(41403892-41404047)
chr8 (34-147)||(40621682-40621795)
chr8 (13-152)||(22781189-22781325)
chr8 (15-88)||(8489509-8489582)
chr8 (69-166)||(6911043-6911140)
chr8 (78-176)||(15009057-15009155)
chr8 (69-166)||(16324858-16324955)
chr8 (69-166)||(8489387-8489484)
chr8 (69-164)||(41403775-41403870)
chr8 (104-164)||(43801486-43801546)
[»] chr3 (15 HSPs)
chr3 (12-166)||(43797485-43797639)
chr3 (12-176)||(4041316-4041480)
chr3 (25-163)||(29828827-29828965)
chr3 (16-165)||(53197003-53197152)
chr3 (12-176)||(38499823-38499986)
chr3 (17-152)||(46883550-46883685)
chr3 (12-152)||(8799449-8799589)
chr3 (23-155)||(25349854-25349986)
chr3 (13-138)||(43797685-43797810)
chr3 (12-138)||(20383165-20383294)
chr3 (68-176)||(38500011-38500118)
chr3 (69-175)||(53197175-53197279)
chr3 (69-166)||(43797366-43797463)
chr3 (69-138)||(46883457-46883526)
chr3 (72-176)||(8799321-8799425)
[»] chr6 (8 HSPs)
chr6 (12-166)||(22748721-22748875)
chr6 (23-176)||(16125526-16125679)
chr6 (12-132)||(11014369-11014489)
chr6 (12-138)||(24565238-24565361)
chr6 (12-77)||(34851439-34851504)
chr6 (69-176)||(22748592-22748699)
chr6 (72-143)||(33277343-33277414)
chr6 (12-79)||(33277439-33277505)
[»] chr5 (15 HSPs)
chr5 (12-158)||(39634827-39634971)
chr5 (13-174)||(36955428-36955589)
chr5 (12-176)||(31193969-31194133)
chr5 (12-166)||(14076801-14076956)
chr5 (12-138)||(42546391-42546517)
chr5 (12-89)||(32346988-32347065)
chr5 (12-86)||(304144-304218)
chr5 (12-79)||(17370200-17370267)
chr5 (69-176)||(17370071-17370178)
chr5 (69-176)||(31194155-31194262)
chr5 (69-166)||(8754672-8754769)
chr5 (69-163)||(39634993-39635086)
chr5 (69-166)||(32347087-32347184)
chr5 (112-176)||(36955307-36955371)
chr5 (69-147)||(42546539-42546617)
[»] chr7 (16 HSPs)
chr7 (12-164)||(26903447-26903596)
chr7 (12-166)||(35207311-35207462)
chr7 (12-146)||(6408387-6408521)
chr7 (12-176)||(19318280-19318445)
chr7 (15-152)||(48006260-48006397)
chr7 (13-81)||(29474512-29474580)
chr7 (12-176)||(35363322-35363486)
chr7 (12-166)||(2834334-2834486)
chr7 (69-176)||(35207182-35207289)
chr7 (61-176)||(25048205-25048321)
chr7 (72-138)||(35363511-35363577)
chr7 (69-166)||(19318161-19318258)
chr7 (69-166)||(29474603-29474699)
chr7 (73-166)||(39983836-39983924)
chr7 (69-166)||(6408267-6408365)
chr7 (112-176)||(19318452-19318516)
[»] chr4 (26 HSPs)
chr4 (15-176)||(5465857-5466018)
chr4 (12-147)||(9551257-9551392)
chr4 (23-175)||(46993213-46993365)
chr4 (23-166)||(24673866-24674008)
chr4 (12-176)||(11789863-11790030)
chr4 (12-138)||(3556498-3556624)
chr4 (22-89)||(19037813-19037880)
chr4 (12-138)||(26297446-26297572)
chr4 (31-131)||(1024956-1025055)
chr4 (34-176)||(23655222-23655365)
chr4 (12-81)||(32591247-32591316)
chr4 (12-166)||(42475890-42476033)
chr4 (71-175)||(46993072-46993176)
chr4 (32-89)||(21785799-21785854)
chr4 (72-166)||(50544270-50544364)
chr4 (26-87)||(53769532-53769593)
chr4 (69-153)||(11790052-11790136)
chr4 (35-166)||(17914906-17915035)
chr4 (104-175)||(54316054-54316125)
chr4 (69-163)||(1025096-1025190)
chr4 (73-176)||(7061976-7062079)
chr4 (105-166)||(50551478-50551539)
chr4 (72-176)||(9551418-9551522)
chr4 (69-147)||(32591338-32591417)
chr4 (111-152)||(5466081-5466122)
chr4 (69-138)||(17914755-17914824)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 3385444 - 3385608
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||| ||||| | ||||||||    
T  3385444 gagaagaagagaacatgatttgtttgttattattatgtatttttattaaacaaatatttattttttaatttaaaatctcaaccgttagatatttttttac 3385543  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    |||||||||||||||||||||||||||  ||||||| |||||| ||||||||||| | |||||||    
T  3385544 cacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccga 3385608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 24883102 - 24883265
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||| ||||| | |||||| |    
T  24883102 gagaagaagagaacatgatttgtttgttattattatgtatttttattaaacaaatattt-ttttttaatttaaaatctcaaccgttagatatttttttgc 24883200  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    |||||||||| ||||||||||||||||  ||||||| |||||||||||||||||||| |||||||    
T  24883201 cacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccga 24883265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 33400990 - 33401141
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||| |   |||||| |    
T  33400990 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttattttttaatttaaaatcttaaccgtta-atttttttttgc 33401088  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatg 164  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  33401089 cacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaatg 33401141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 34970118 - 34970253
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||| | |||||| |    
T  34970118 gagaagaagggaacatgggttgtttgttattattatgtatttttattaaacaaatatttattttttaatttaaaatcttaaccgttagatatttttttgc 34970217  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaat 147  Q
    ||||| ||||||||||||||| ||||||||||||||    
T  34970218 cacatgtcttacatccaaaccttaaataaagtaaat 34970253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 27171967 - 27171815
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||| ||||| | |||||| |    
T  27171967 gagaagaagggaacatgatttgtttgttattattatgtatttctgttaaacaaatatttgttttttaatttaaaatctcgaccgttagatatttttttgc 27171868  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatg 164  Q
    ||||| ||||||||||||||| |||||  |||||||  |||||||||||||||    
T  27171867 cacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatg 27171815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 13947090 - 13946964
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    |||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||| | |||||| |    
T  13947090 gagaagaaggaaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgc 13946991  T
Q  112 cacatatcttacatccaaaccctaaat 138  Q
    ||||| |||||||||||||||||||||    
T  13946990 cacatgtcttacatccaaaccctaaat 13946964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 33156588 - 33156741
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||| |||| |  |||||| |    
T  33156588 gagaagaagggaacatgatttgtttgttatcattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttag-attttttttgc 33156686  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||| ||||  |||||||||||||||  |||||||  |||||||||||||||||    
T  33156687 cacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatgga 33156741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 37948956 - 37948802
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||| | |||||| |    
T  37948956 gagaagaaaggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgc 37948857  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
     |||| ||||||||||||||| |||||  |||||||  |||||| | ||||||||    
T  37948856 aacatgtcttacatccaaaccttaaattgagtaaatgaagcttaacttaaatgga 37948802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 39781232 - 39781074
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| |      |||||||||    
T  39781232 gagaagaagggaacataatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgt------cttttttac 39781139  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||| |||  ||||||||| |||||| ||||||||  | ||||  ||||||| ||| |||||||    
T  39781138 cacatgtctcgcatccaaactctaaatgaagtaaatgaaacttaatctaaatgaaacatacccga 39781074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 49776983 - 49776823
Alignment:
Q  15 aagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccac 114  Q
    |||||| |||||||| |||||||||||||||||||||||| |||||||||||| || | ||||||||||||||||  ||| ||  | | |||||||||||    
T  49776983 aagaagggaacatgatttgtttgttattattatgtatttttattaaacaaata-ttatcttttaatttaaaatctcaaccgttcaatatttttttaccac 49776885  T
Q  115 atatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    || |||| |||||||| |||||||  |||||||  |||||||| |||||||| | |||||||    
T  49776884 atgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccga 49776823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 38338800 - 38338920
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||| ||| |||||||| ||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |  ||  ||||| | |||||| |    
T  38338800 gagaataagggaacatgatttgtttgatattattatgtatttttattaaacaaatatttattttttaatttaaaatttcaactgttagatatttttttgc 38338899  T
Q  112 cacatatcttacatccaaacc 132  Q
    ||||| |||||||||||||||    
T  38338900 cacatgtcttacatccaaacc 38338920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 43297003 - 43297110
Alignment:
Q  31 ttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaa 130  Q
    ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||  ||| ||||| | ||||||  ||||| |||| ||||||||    
T  43297003 ttgtttgttattattgtgtatttttattaaataaatatttgttttttaatttaaaatctcaaccgttagatatttttttggcacatgtcttgcatccaaa 43297102  T
Q  131 ccctaaat 138  Q
     |||||||    
T  43297103 tcctaaat 43297110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 42082984 - 42082904
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattat---gtattttcattaaacaaatatttgttttttaatttaaaatct 89  Q
    ||||||||| |||||||| |||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||||    
T  42082984 gagaagaagggaacatgatttgtttgttattattattatgtatttttattaaacaaatatttgttttttaatttaaaatct 42082904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 49777013 - 49777110
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||||||||||||  ||| ||||| | ||||||  ||||| |||| ||||||||||||||||| | ||||| ||| ||||||||||||||    
T  49777013 ttgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaatgga 49777110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 33400968 - 33400869
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaactttttta--ccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||| ||||||||||| ||||||||| ||||||||   ||||||  |||||||||||||| |||||  ||||||| ||||||||| ||||||||    
T  33400968 ttgttttttagtttaaaatcttaaccattagatacttttttttgccacatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaatgga 33400869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 34970096 - 34970001
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatg 164  Q
    |||||||||||||||||||||  ||| ||||| | ||||||||||||| |||| |||||||| |||||||  ||||||| ||| ||| ||||||||    
T  34970096 ttgttttttaatttaaaatctcaaccgttagatatttttttaccacatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaatg 34970001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 37948982 - 37949047
Alignment:
Q  73 tttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaat 138  Q
    |||||||||||||||||| ||||||||| | || ||| |||||| |||||||||||| ||||||||    
T  37948982 tttttaatttaaaatcttaaccattagatatttgtttgccacatgtcttacatccaagccctaaat 37949047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 5772014 - 5771922
Alignment:
Q  74 ttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||||||||||||||  ||| ||||| | |||||| ||| ||||||||||| ||||| ||||||  |||||||  ||||||| |||||||||    
T  5772014 ttttaatttaaaatctcaaccgttagatatttttttgccatatatcttacattcaaactctaaatggagtaaatgaagcttagtctaaatgga 5771922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 38338778 - 38338715
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaacc 132  Q
    |||||||||||||||||||||  ||| ||||| | |||||| ||| ||||||||||||||||||    
T  38338778 ttgttttttaatttaaaatctcaaccgttagatatttttttgccatatatcttacatccaaacc 38338715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 3385419 - 3385324
Alignment:
Q  72 ttttttaatttaaaatcttgaccattagaaa---cttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatg 164  Q
    ||||||||||||||||||| ||| ||||| |    |||||| |||||| |||||||||||||||||||||   |||||   |||||||||||||||    
T  3385419 ttttttaatttaaaatcttaaccgttagatattttttttttgccacatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaatg 3385324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 13947112 - 13947181
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaat 138  Q
    ||||||||||||||||||| |  ||| ||| | | ||||||||||||| |||||||||||||| ||||||    
T  13947112 ttgttttttaatttaaaatatcaaccgttacatatttttttaccacatgtcttacatccaaacgctaaat 13947181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 27171989 - 27172058
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaat 138  Q
    ||||||||||||| |||||||  ||| ||||| | |||||| |||||| ||||||||||||||| |||||    
T  27171989 ttgttttttaattgaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaaccttaaat 27172058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 24883047 - 24882975
Alignment:
Q  104 ttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    |||||| |||| | |||| ||||||||||||||||  ||||||| ||| |||||||||||||| | |||||||    
T  24883047 ttttttgccacgtgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccga 24882975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 21265695 - 21265846
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||| |||||||| |    
T  21265695 gagaagaagagaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccattagatacttttttgc 21265794  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaat 163  Q
    ||||| |||| ||||||||||||||||| ||||||| ||||||||| |||||    
T  21265795 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaat 21265846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 22563378 - 22563214
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  ||| ||| | | |||||| |    
T  22563378 gagaagaagggaacatgatttgtttgttattattatgtagttttattaaacaaatatttgttttttaatttaaaatctcaaccgttaaatatttttttgc 22563279  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||| |||| ||||||||||||||||  ||||||| |||||||||||||||||| | |||||||    
T  22563278 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccga 22563214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 29892967 - 29892820
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||| |||||||||| | |||||| |    
T  29892967 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaataaatatttattttttaatttaaaatctcgaccattagata-tttttttc 29892869  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagccta 160  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||| ||||    
T  29892868 cacatatcttacatccaaatcctaaataaaataaatggagcttaaccta 29892820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 20296416 - 20296276
Alignment:
Q  26 atgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacat 125  Q
    |||| |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| ||| || || |||||||| ||| || |||| |||    
T  20296416 atgatttgtttgttattattatgtatttttattaaacaaatattcggtttttaatttaaaatcttaaccgttggatacttttttgccatatgtctttcat 20296317  T
Q  126 ccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||||||||||| |||||||| || ||||||| |||||||    
T  20296316 ccaaaccctaaatgaagtaaatggatcttagccaaaatgga 20296276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 17200211 - 17200364
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |  | | ||||| | |||||| |    
T  17200211 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatctgttttataatttaaaatatcaatcgttagatatttttttgc 17200310  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||| ||||||||||||||| |||||  ||||||| |||||||| |||||||||    
T  17200311 cacatgtcttacatccaaaccttaaatggagtaaatggagcttag-ctaaatgga 17200364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 157111 - 156971
Alignment:
Q  16 agaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccaca 115  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||  ||| ||||| | |||| | ||| |    
T  157111 agaagagaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttcaaatctcaaccgttagatatttttctgcca-a 157013  T
Q  116 tatcttacatccaaaccctaaataaagtaaattgagcttagc 157  Q
    | ||||||||||||| |||||||  ||||||| |||||||||    
T  157012 tgtcttacatccaaatcctaaatggagtaaatggagcttagc 156971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 34645714 - 34645551
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||  | | ||||| | |||||| |    
T  34645714 gagaagaagggaacatgaattgtttgttattattatgtatttttattaaataaatatttgttttttaatttaaaatctcaatcgttagata-ttttttgc 34645616  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||| |||| |||||| |||||||||  ||||||| || |||| ||||||| || | |||||||    
T  34645615 cacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagcatacccga 34645551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 12232695 - 12232821
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||   |  ||||| | |||||| |    
T  12232695 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaatatctcacctgttagatatttttttgc 12232794  T
Q  112 cacatatcttacatccaaaccctaaat 138  Q
    ||||| |||| |||| ||| |||||||    
T  12232795 cacatgtcttgcatctaaatcctaaat 12232821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 13979800 - 13979723
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatct 89  Q
    |||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  13979800 gagaagaagagaacataatttgtttgttattattatgtatttttattaaacaaatatttattttttaatttaaaatct 13979723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 12232673 - 12232577
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||||||||||||  ||| ||||| | |||||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  12232673 ttgttttttaatttaaaatctcaaccgttagata-ttttttgccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatgga 12232577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 8237988 - 8237886
Alignment:
Q  35 ttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccct 134  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||  || |||||| |||||||| |||||| |||| ||||| || |||    
T  8237988 ttgttattattatgtatttttattaaacaaatatttgt-ttttaatttaaaatctcaactattagatacttttttgccacatgtcttgcatcctaatcct 8237890  T
Q  135 aaat 138  Q
    ||||    
T  8237889 aaat 8237886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 17200189 - 17200082
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaac 168  Q
    |||||||||||||||||||||  ||||||||| | || ||| |||||| ||||||||||||| |||||||  ||||||| |||||| ||||||||||| |    
T  17200189 ttgttttttaatttaaaatctcaaccattagatatttatttgccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagc 17200090  T
Q  169 gtacccga 176  Q
     |||||||    
T  17200089 atacccga 17200082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 21265673 - 21265577
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||||||||||||  ||| ||||| | |||||| |||||| |||| ||||||||||||||||  |||||||||||||||| |||||||||    
T  21265673 ttgttttttaatttaaaatctcaaccgttagata-ttttttgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatgga 21265577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 29892989 - 29893094
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaac 168  Q
    |||||||||||||||||||||  ||| ||||| | |||| |  ||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||| |    
T  29892989 ttgttttttaatttaaaatctcaaccgttagatatttttgt--cacatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaatggagc 29893086  T
Q  169 gtacccga 176  Q
     |||||||    
T  29893087 atacccga 29893094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 22563400 - 22563507
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaac 168  Q
    |||||||||||||||||||||  ||| ||||| | |||||| |||||| |||| |||||||| |||||||  ||||||| ||| |||||||||||||| |    
T  22563400 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagc 22563499  T
Q  169 gtacccga 176  Q
     |||||||    
T  22563500 atacccga 22563507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 4371551 - 4371458
Alignment:
Q  83 aaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    |||||||  ||||||||| | |||||| |||||| |||| ||||||||||||||||  ||||||| |||||||||||||||||| | |||||||    
T  4371551 aaaatctcaaccattagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccga 4371458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 34645736 - 34645843
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaac 168  Q
    |||||||||||||||||||||  ||| ||||| | ||| || |||||| |||||||||||||||||||||  | ||||| ||| | |||||||||||||     
T  34645736 ttgttttttaatttaaaatctcaaccgttagatattttcttgccacatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaatggaat 34645835  T
Q  169 gtacccga 176  Q
     |||||||    
T  34645836 atacccga 34645843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 20296606 - 20296700
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaat 163  Q
    |||||||||||||||||||||  ||| || || | |||||| |||||| ||||||||||||  | |||||  ||||||| |||||||||||||||    
T  20296606 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaat 20296700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 33491417 - 33491455
Alignment:
Q  128 aaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  33491417 aaaccctaaatagagtaaatggagcttagcctaaatgga 33491455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 14999339 - 14999185
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||| ||||| || |    
T  14999339 gagaagaagggaacataatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaactattagatactttattgc 14999240  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||| |||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  14999239 cacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatgga 14999185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 41721960 - 41722124
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||| | |||||| |    
T  41721960 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgtttttttatttaaaatcttaaccgttagatatttttttgc 41722059  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
     |||| |||| ||||||| | ||||||||||||||| |||||||||||||||| ||| |||||||    
T  41722060 aacatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaatgaaacatacccga 41722124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 43801615 - 43801768
Alignment:
Q  23 aacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatctta 122  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |  ||  ||||| | |||||| |||||||||||     
T  43801615 aacatgatttgtttgttattattatgtatttttattaaacaaatattagttttttaatttaaaatttcaactgttagatatttttttgccacatatcttg 43801714  T
Q  123 catccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||||||| ||||||  ||||||| |||||||||||||||||||| |||||||    
T  43801715 catccaaactctaaatggagtaaatggagcttagcctaaatggaacatacccga 43801768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 6911162 - 6911297
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| || || | |||||| |    
T  6911162 gagaagaagggaacatgatttgtttgtaattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttggatatttttttgc 6911261  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaat 147  Q
    ||||| |||| ||||||||||||||||  |||||||    
T  6911262 cacatgtcttgcatccaaaccctaaatggagtaaat 6911297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 16324977 - 16325131
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||  ||| ||||| | ||||||||    
T  16324977 gagaagaagggaacatgatttgtttgttattattatgtatttttatcaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttac 16325076  T
Q  112 c--acatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatg 164  Q
    |  |||| |||| ||||||||||||||||  ||||||| ||| || || ||||||    
T  16325077 catacatgtcttgcatccaaaccctaaatggagtaaatggagtttggcttaaatg 16325131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 41403892 - 41404047
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttt-ttta 110  Q
    |||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||| ||| | | ||| |||     
T  41403892 gagaagaaggaaacatgatttgtttgttattattatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttaaatattttgtttg 41403991  T
Q  111 ccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
     ||||| |||| ||||||||||||||||| |||||||||| |||| ||||||||||    
T  41403992 tcacatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatgga 41404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 40621682 - 40621795
Alignment:
Q  34 tttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccc 133  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||| | ||||||||||||| | |||||| |||||||    
T  40621682 tttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttaccacatgttttacattcaaaccc 40621781  T
Q  134 taaataaagtaaat 147  Q
    ||||| ||||||||    
T  40621782 taaatgaagtaaat 40621795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 22781189 - 22781325
Alignment:
Q  13 agaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttacc 112  Q
    |||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||  ||| ||| ||  ||||||  |    
T  22781189 agaagaagggaacatga-ttgtttgttattattatatatttt-attaaacaaatatttgttttttaatttaaaatctcaaccgtta-aatattttttgtc 22781285  T
Q  113 acatatcttacatccaaaccctaaataaagtaaattgagc 152  Q
    ||||||||| ||||||||||||||||  ||||||| ||||    
T  22781286 acatatcttgcatccaaaccctaaattgagtaaatggagc 22781325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 8489509 - 8489582
Alignment:
Q  15 aagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatc 88  Q
    |||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8489509 aagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatc 8489582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 6911140 - 6911043
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||||||||||||  | | ||||| | |||||| |||||| |||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  6911140 ttgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatgga 6911043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 15009057 - 15009155
Alignment:
Q  78 aatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||||||||||| ||  ||||| |||||||| |||||| |||||||||||||||||||||  |||||||  ||||||||||||||||| | |||||||    
T  15009057 aatttaaaatcttaactgttagatacttttttgccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccga 15009155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 16324955 - 16324858
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||||||||||||  ||| ||||| | ||||||  ||||| |||| ||||||||||||||||  | ||||||||||||||||||||||||    
T  16324955 ttgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaatgga 16324858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 8489484 - 8489387
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||||||||||||  | | ||||| | |||||| |||||| |||||||||||||||||||||  | |||||  |||||| ||||||||||    
T  8489484 ttgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatgga 8489387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 41403870 - 41403775
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatg 164  Q
    |||||||||||||||||||||  ||  ||||| | ||||||  ||||||||||||||| ||| |||||||  |||||||||||||||  |||||||    
T  41403870 ttgttttttaatttaaaatctcaactgttagatatttttttgtcacatatcttacatcaaaatcctaaatggagtaaattgagcttaatctaaatg 41403775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 43801546 - 43801486
Alignment:
Q  104 ttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatg 164  Q
    |||||| |||||| |||||||||||||| ||||||  |||||||  || ||||||||||||    
T  43801546 ttttttgccacatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaatg 43801486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 43797485 - 43797639
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| || || ||||||||      
T  43797485 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttggtttttaatttaaaatcttaaccgttggatacttttttgt 43797584  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||| |||| ||||||||||||||||| ||||||| || |||||||||||||||    
T  43797585 cacatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatgga 43797639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 4041316 - 4041480
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| ||||  || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||  ||| ||||| | |||||| |    
T  4041316 gagaagaagggaactcgatttgtttgttattattatgtatttttagtaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgc 4041415  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||| |||| ||||||||||||||||  |||||||  ||||||||||||||||| | |||||||    
T  4041416 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccga 4041480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 29828827 - 29828965
Alignment:
Q  25 catgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttaca 124  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||| | |||||| ||||||||||||||    
T  29828827 catgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatatcttaca 29828926  T
Q  125 tccaaaccctaaataaagtaaattgagcttagcctaaat 163  Q
    |||||| |||||||  | ||||| ||||||||| |||||    
T  29828927 tccaaatcctaaatggaataaatggagcttagcttaaat 29828965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 53197152 - 53197003
Alignment:
Q  16 agaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccaca 115  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||  ||| ||||| | |||||| |||||    
T  53197152 agaagagaacatgatttgtttgttattattatgtatttttattaaataaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccaca 53197053  T
Q  116 tatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgg 165  Q
    | | || ||||||||||||||||| |||||||  || ||||| |||||||    
T  53197052 tgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaatgg 53197003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 38499986 - 38499823
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||  ||| |||| |  |||||| |    
T  38499986 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttggtttttagtttaaaatctcaaccgttag-attttttttgc 38499888  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||| ||||  |||||||||||||||  ||||||| |||||||||||||||||| | |||||||    
T  38499887 cacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccga 38499823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 46883550 - 46883685
Alignment:
Q  17 gaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacat 116  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||| | |||||| ||||||    
T  46883550 gaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacat 46883649  T
Q  117 atcttacatccaaaccctaaataaagtaaattgagc 152  Q
     |||| ||||||||||||||||  ||||||| ||||    
T  46883650 gtcttgcatccaaaccctaaatggagtaaatggagc 46883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 8799449 - 8799589
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||| | | |||||| |    
T  8799449 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttatatatttttttgc 8799548  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagc 152  Q
    ||||| |||| |||| |||||||||||  ||||||| ||||    
T  8799549 cacatgtcttgcatctaaaccctaaatggagtaaatggagc 8799589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 25349854 - 25349986
Alignment:
Q  23 aacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatctta 122  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||  ||| |||||   ||||||  ||||| |||||    
T  25349854 aacatgagttgtttgttattattatgtatttttgttaaacaaatatttattttttaatttaaaatctcaaccgttagatgtttttttggcacatgtctta 25349953  T
Q  123 catccaaaccctaaataaagtaaattgagctta 155  Q
    ||||||||||||||||| | ||||| |||||||    
T  25349954 catccaaaccctaaatagaataaatggagctta 25349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 43797810 - 43797685
Alignment:
Q  13 agaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttacc 112  Q
    |||| |||||||||| | |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |  ||||||||| | |||||| ||    
T  43797810 agaaaaagagaacataatttgtttgttattattatgtaattttattaaacaaatatttattttttaatttaaaatttcaaccattagatatttttttgcc 43797711  T
Q  113 acatatcttacatccaaaccctaaat 138  Q
    |||| ||||||||||||||| |||||    
T  43797710 acatgtcttacatccaaaccttaaat 43797685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 20383165 - 20383294
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaa-atat--ttgttttttaatttaaaatcttgaccattagaaacttttt 108  Q
    ||||||||| ||||| || |||||||||||||||||||||||| |||||| || || |  || ||||||||||||||||||  ||| ||||| |||||||    
T  20383165 gagaagaagggaacaagatttgtttgttattattatgtatttttattaaataatattttatttttttttaatttaaaatctcaaccgttagatacttttt 20383264  T
Q  109 taccacatatcttacatccaaaccctaaat 138  Q
    |||||||  |||| ||||||||| ||||||    
T  20383265 taccacacgtctttcatccaaactctaaat 20383294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 38500011 - 38500118
Alignment:
Q  68 tttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaa 167  Q
    ||||||||||||||||||||||  ||  ||||| | |||||| |||||| ||||||||||||||||||| |  ||||||| ||||||||||||||||||     
T  38500011 tttgttttttaatttaaaatctcaactgttagatattttttt-ccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggag 38500109  T
Q  168 cgtacccga 176  Q
    | |||||||    
T  38500110 catacccga 38500118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 53197175 - 53197279
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaac 168  Q
    |||||||||||||||||||||||||  ||||| | |||||| |||||| |||| ||||||||||||||||  |||||||  ||||||||||||||||| |    
T  53197175 ttgttttttaatttaaaatcttgacg-ttagata-ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagc 53197272  T
Q  169 gtacccg 175  Q
     ||||||    
T  53197273 atacccg 53197279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 43797463 - 43797366
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||||||||||||  ||| || || | |||||| |||||| |||| |||||||||| |||||  ||||||| ||||||||||||||||||    
T  43797463 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatgga 43797366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 46883526 - 46883457
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaat 138  Q
    |||||||||||||||||||||  ||| ||||| | |||||| |||||| |||||||||||||||||||||    
T  46883526 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaaccctaaat 46883457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 8799425 - 8799321
Alignment:
Q  72 ttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgta 171  Q
    ||||||||||||||||||  ||  ||||| |  ||||| |||||| |||| ||||||||||||||||  ||||||| |||| ||||||||||||| | ||    
T  8799425 ttttttaatttaaaatctcaactgttagatatatttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcata 8799326  T
Q  172 cccga 176  Q
    |||||    
T  8799325 cccga 8799321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 22748721 - 22748875
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| || ||  |||||||||    
T  22748721 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgatttttaatttaaaatcttaaccgttggatgcttttttac 22748820  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||| |||| |||||||| |||||||  ||||||| || ||||| |||||||||    
T  22748821 cacatgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaatgga 22748875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 16125679 - 16125526
Alignment:
Q  23 aacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatctta 122  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |  | | ||| | | |||||| |||||| ||||     
T  16125679 aacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatttcaatcgttaaatatttttttgccacatgtcttg 16125580  T
Q  123 catccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    |||||||||||||||| || |||||  || |||||||||||||| | |||||||    
T  16125579 catccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatacccga 16125526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 11014489 - 11014369
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||| ||||||||||||||||||||| |||| |||||||||||||||  |||||||||||||||||  ||  ||| | | |||||||     
T  11014489 gagaagaagggaacataagttgtttgttattattatgtgtttttattaaacaaatatttactttttaatttaaaatctcaactgttaaatatttttttat 11014390  T
Q  112 cacatatcttacatccaaacc 132  Q
    ||||| |||||||||||||||    
T  11014389 cacatgtcttacatccaaacc 11014369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 24565238 - 24565361
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||| | || ||||||||||||||||||||| ||||||||| | |||  |||||||||||||||||  ||| |||||   |||||| |    
T  24565238 gagaagaagggaacat-atttatttgttattattatgtatttttattaaacaatttttt--tttttaatttaaaatctcaaccgttagatgtttttttgc 24565334  T
Q  112 cacatatcttacatccaaaccctaaat 138  Q
    ||||| ||||||||| |||||||||||    
T  24565335 cacatgtcttacatctaaaccctaaat 24565361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 34851439 - 34851504
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgtttttt 77  Q
    ||||||||| |||||||| || ||||||||||||||||||||| |||||||| |||||||||||||    
T  34851439 gagaagaagggaacatgatttatttgttattattatgtatttttattaaacacatatttgtttttt 34851504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 22748699 - 22748592
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaac 168  Q
    |||||||||||||||||||||  ||| || || | |||||| |||||| |||| |||||||| | |||||  ||||||| |||| |||||||||| || |    
T  22748699 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagc 22748600  T
Q  169 gtacccga 176  Q
     |||||||    
T  22748599 atacccga 22748592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 33277414 - 33277343
Alignment:
Q  72 ttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagt 143  Q
    ||||||||||||||||||  ||||||| | | |||||| |||||| |||| |||||||||||||||| ||||    
T  33277414 ttttttaatttaaaatctcaaccattaaatatttttttgccacatgtcttgcatccaaaccctaaatgaagt 33277343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 33277439 - 33277505
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaa 79  Q
    ||||||||  |||||||| |||||| | |||||||||||| || ||||||||||||||||||||||||    
T  33277439 gagaagaatggaacatgatttgtttct-attattatgtatcttaattaaacaaatatttgttttttaa 33277505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 39634971 - 39634827
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| |||| |  |||||| |    
T  39634971 gagaagaagagaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttag-attttttttgc 39634873  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcc 158  Q
    ||||| ||||||||||||||||| ||| |||||||| ||||||||||    
T  39634872 cacatgtcttacatccaaaccct-aatgaagtaaatggagcttagcc 39634827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 36955428 - 36955589
Alignment:
Q  13 agaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttacc 112  Q
    |||||||| |||||||| |||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||   ||| ||||| | |||||| ||    
T  36955428 agaagaagggaacatgatttgtttgttattattatgtatttttattaatgagatatttgttttttaatttaaaatcgcaaccgttagatatttttttgcc 36955527  T
Q  113 acatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtaccc 174  Q
    |||| |||| || |||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  36955528 acatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatggagcgtaccc 36955589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 31194133 - 31193969
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||  ||| || || | |||||| |    
T  31194133 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttagtttttaatttaaaatctcaaccgttggatatttttttgc 31194034  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||| |||| |||||||||| |||||  ||||||| |||||||||||||||||| | |||||||    
T  31194033 cacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccga 31193969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 14076801 - 14076956
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaa-tatttgttttttaatttaaaatcttgaccattagaaactttttta 110  Q
    ||||||||| |||||| | |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||  ||| ||| | | ||||||     
T  14076801 gagaagaagggaacataatttgtttgttattattatgtatttttattaaaaaaaatatttgttttttaatttaaaatctcaaccgttaaatatttttttg 14076900  T
Q  111 ccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||| |||| ||||||||||||||||  ||||||| || |||||||||||||||    
T  14076901 ccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatgga 14076956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 42546517 - 42546391
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||| | |||||| |    
T  42546517 gagaagaatggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgc 42546418  T
Q  112 cacatatcttacatccaaaccctaaat 138  Q
    || || |||| ||||||||||||||||    
T  42546417 caaatgtcttgcatccaaaccctaaat 42546391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 32347065 - 32346988
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatct 89  Q
    ||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  32347065 gagaagaagggaacatgatttgtttgttattattatatatttttattaaacaaatatttgttttttaatttaaaatct 32346988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 304144 - 304218
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaa 86  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  304144 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaataaatatttgttttttaatttaaaa 304218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 17370200 - 17370267
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaa 79  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17370200 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaa 17370267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 17370178 - 17370071
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaac 168  Q
    |||||||||||||||||||||  ||| ||||| | |||||| |||||| |||| ||||||||||||||||  ||||||| ||| ||||| |||||||| |    
T  17370178 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagc 17370079  T
Q  169 gtacccga 176  Q
     |||||||    
T  17370078 atacccga 17370071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 31194155 - 31194262
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaac 168  Q
    |||||||||||||||||||||  ||| || || | |||||| |||||| |||| |||||||||| |||||  ||||||| |||||||||||||||||| |    
T  31194155 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagc 31194254  T
Q  169 gtacccga 176  Q
     |||||||    
T  31194255 atacccga 31194262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 8754769 - 8754672
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||||||||||||||||| |  ||| |||||   |||||| |||||| |||| ||||||||||||||||| ||||||| ||| |||| |||||||||    
T  8754769 ttgttttttaatttaaaatttcaaccgttagatctttttttgccacatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaatgga 8754672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 39634993 - 39635086
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaat 163  Q
    |||||||||||||||||||||  ||| ||| | | |||||| || |||||||||||||||||||||||||  |||| ||  ||||||||||||||    
T  39634993 ttgttttttaatttaaaatctcaaccgttacatatttttttgccgcatatcttacatccaaaccctaaat-gagtatatgaagcttagcctaaat 39635086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 32347087 - 32347184
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||||||| ||||  ||  ||||| | ||||||  ||||| ||||||||||||||| |||||  ||||| | ||||||||||||||||||    
T  32347087 ttgttttttaatttaagatctaaacagttagatatttttttgtcacatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaatgga 32347184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 36955371 - 36955307
Alignment:
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||| |||| ||||||||||||||||  |||||||  ||||||||||||||||| | |||||||    
T  36955371 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccga 36955307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 42546539 - 42546617
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaat 147  Q
    |||||||||||||||||||||  ||| |||||   ||||||  ||||| |||| ||||||||||||||||  |||||||    
T  42546539 ttgttttttaatttaaaatctcaaccgttagatgtttttttgtcacatgtcttgcatccaaaccctaaatggagtaaat 42546617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 26903596 - 26903447
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| || || |||||||| |    
T  26903596 gagaagaagagaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttcgatacttttttgc 26903497  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatg 164  Q
    ||||| | ||| |  |||||||||||| ||||||||  |||||||||||||||    
T  26903496 cacatgt-ttaaa--caaaccctaaatgaagtaaatgaagcttagcctaaatg 26903447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 35207311 - 35207462
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||   |  |||||| |    
T  35207311 gagaagaagggaacatgattagtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcgaccgtt---attttttttgc 35207407  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||| |||| ||||||||||||||||  ||||||| ||| ||||||||||||||    
T  35207408 cacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatgga 35207462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 6408387 - 6408521
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| ||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||  ||| ||||| | |||||| |    
T  6408387 gagaagaagggaatatgatttgtttgttattattatgtatttttattagacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgc 6408486  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaa 146  Q
    ||||| |||| |||||||||||||||| |||||||    
T  6408487 cacatgtcttgcatccaaaccctaaatgaagtaaa 6408521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 19318280 - 19318445
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgtttt-ttaatttaaaatcttgaccattagaaactttttta 110  Q
    ||||||||  |||||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||  ||| ||||| | ||||||     
T  19318280 gagaagaaaggaacatgatttgtttgttattattatgtatgtttattaaacaaatatttgttttcttaatttaaaatctcaaccgttagatatttttttg 19318379  T
Q  111 ccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    |||||| |||| |||| ||||| |||||  |||||||  ||||||||||||||||| | |||||||    
T  19318380 ccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccga 19318445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 48006260 - 48006397
Alignment:
Q  15 aagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccac 114  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| ||| | | |||||| ||||    
T  48006260 aagaagggaacatgatttgtttgttattattatgtattttcattaaacaaatatttattttttaatttaaaatctcaaccgttaaatatttttttgccac 48006359  T
Q  115 atatcttacatccaaaccctaaataaagtaaattgagc 152  Q
    || | || |||||||| |||||||| ||||||| ||||    
T  48006360 atgttttgcatccaaatcctaaatagagtaaatggagc 48006397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 29474580 - 29474512
Alignment:
Q  13 agaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatt 81  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29474580 agaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatt 29474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 35363486 - 35363322
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||| ||| |||||| | |||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||  ||| ||| |   |||||| |    
T  35363486 gagaaaaagggaacataatttgtttgttattattatgtatttttattaaacaaatacttattttttaatttaaaatctcaaccgttatatttttttttgc 35363387  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||| | || |||| |||| ||||||  |||||||  | ||||||||||||||| | |||||||    
T  35363386 cacatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcatacccga 35363322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 2834334 - 2834486
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    |||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||  ||  ||| | | | |||| |    
T  2834334 gagaagaaggaaacatgatttgtttgttattattatgtatttttattaaacaaatatt--ttttttaatttaaaatctcaactgttacatattattttgc 2834431  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||| | ||  |||||||||||||||  | ||||| || |||||||||||||||    
T  2834432 cacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatgga 2834486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 35207289 - 35207182
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaac 168  Q
    |||||||||||||||||||||  ||| ||||| | |||||| |||||| |||| ||||||||||||||||  ||||||| |||||||||||||||||||     
T  35207289 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaat 35207190  T
Q  169 gtacccga 176  Q
     |||||||    
T  35207189 atacccga 35207182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 25048205 - 25048321
Alignment:
Q  61 acaaatatttgttttttaatttaaaatcttgaccattagaa-acttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcct 159  Q
    |||||||||| ||||||||||||||||||  ||| || ||| | ||||||  ||||| |||| |||||||| ||||||| |||||||| |||||||||||    
T  25048205 acaaatatttattttttaatttaaaatctcaaccgtttgaatatttttttgtcacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcct 25048304  T
Q  160 aaatggaacgtacccga 176  Q
    ||||||| | |||||||    
T  25048305 aaatggagcatacccga 25048321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 35363511 - 35363577
Alignment:
Q  72 ttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaat 138  Q
    ||||||||||||||||||  ||||||||| | |||||| ||||||||||||| |||||| |||||||    
T  35363511 ttttttaatttaaaatctcaaccattagatatttttttgccacatatcttacctccaaatcctaaat 35363577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 19318258 - 19318161
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||||||||||||  | | ||||| | ||||||  ||||| |||||||||||||| ||||||  ||||||| | ||||| ||||||||||    
T  19318258 ttgttttttaatttaaaatctcaatcgttagatatttttttgtcacatgtcttacatccaaactctaaatggagtaaatggcgcttaacctaaatgga 19318161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 29474603 - 29474699
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||||||||||||||||| |  ||| ||||| | |||||| | |||| |||| ||||||| | ||||||| ||||||| ||| ||||||||||||||    
T  29474603 ttgttttttaatttaaaatttcaaccgttagatattttttt-ctacatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaatgga 29474699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 39983836 - 39983924
Alignment:
Q  73 tttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||||||||  ||| |||||| |||||    ||||| |||| ||||||||||||||||  ||||||| |||||| |||||||||||    
T  39983836 tttttaatttaaaatctcaaccgttagaa-ctttt----cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatgga 39983924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 6408365 - 6408267
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattaga-aacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    |||||||||||| ||||||||  ||| ||| | |  |||||| ||||||||||  ||| |||| ||||||| |||||||| |||||||| |||||||||    
T  6408365 ttgttttttaatataaaatctcaaccgttacatattttttttgccacatatctgccattcaaatcctaaatgaagtaaatggagcttagactaaatgga 6408267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 19318452 - 19318516
Alignment:
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||| |||| |||| ||||| |||||  ||||||| |||||||||||||||||| | |||||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccga 19318516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 5466018 - 5465857
Alignment:
Q  15 aagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccac 114  Q
    |||||| |||||||| || ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||  ||| ||||| | |||||| ||||    
T  5466018 aagaagggaacatgatttatttgttattattatgtattattattaaataaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccac 5465919  T
Q  115 atatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    || ||||||||| ||||||||||| ||||||||  | ||||||||||||||| | |||||||    
T  5465918 atgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcatacccga 5465857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 9551392 - 9551257
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||| | ||||||      
T  9551392 gagaagaagggaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttga 9551293  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaat 147  Q
    ||||| |||| |||||||| | ||||| ||| ||||    
T  9551292 cacatgtcttgcatccaaatcttaaatgaagcaaat 9551257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 46993213 - 46993365
Alignment:
Q  23 aacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatctta 122  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  | | ||||| | |||||| | | |||||||     
T  46993213 aacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatctcaatcgttagatatttttttgctaaatatcttg 46993312  T
Q  123 catccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccg 175  Q
    ||| |||| | |||||  ||||||||||||||||  |||||||| | ||||||    
T  46993313 cattcaaatcttaaatggagtaaattgagcttagtttaaatggagcatacccg 46993365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 24673866 - 24674008
Alignment:
Q  23 aacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatctta 122  Q
    ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||  | | ||||| | ||||||  || || |||||    
T  24673866 aacatgatttgtttgttattattatgtatttt-attaaataaatatttgttttttaatttaaaatctcaatcgttagatatttttttgtcatatgtctta 24673964  T
Q  123 catccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||||||| ||||||| |||||||  || ||||||||||||||    
T  24673965 catccaaactctaaatagagtaaatgaagtttagcctaaatgga 24674008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 11790030 - 11789863
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattat---gtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttt 108  Q
    ||||||||| | |||||| |||||||||||||||||   ||||||  ||||||||||||||||||||||||||||||||||  ||| ||  | | |||||    
T  11790030 gagaagaaggggacatgatttgtttgttattattattatgtatttctattaaacaaatatttgttttttaatttaaaatctcaaccgttgaatatttttt 11789931  T
Q  109 taccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    | ||||||||||| |||| |||||||||||  |||||||  ||||| ||||||||||| | |||||||    
T  11789930 tgccacatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatacccga 11789863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 3556498 - 3556624
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgtttttt-aatttaaaatcttgaccattagaaactttttta 110  Q
    ||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||  | |||||||||  ||| ||||| | ||||||     
T  3556498 gagaagaag-gaacatgatttgtttgttattattatatatttttattaaacaaatatttgttttttctaattaaaatctcaaccgttagatatttttttg 3556596  T
Q  111 ccacatatcttacatccaaaccctaaat 138  Q
    |||||| |||| ||||||||||||||||    
T  3556597 ccacatgtcttgcatccaaaccctaaat 3556624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 19037880 - 19037813
Alignment:
Q  22 gaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatct 89  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19037880 gaacatgatttgtttgttattattatgtatttttattaaacaaatatttgttttttaatttaaaatct 19037813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 26297446 - 26297572
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    |||||||||  ||||| | |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||  ||  ||||| | ||||||      
T  26297446 gagaagaaggaaacataatttgtttgttattattatgtatttttattaaacgaatatttattttttaatttaaaatctcaactgttagatatttttttgt 26297545  T
Q  112 cacatatcttacatccaaaccctaaat 138  Q
    |||||||||| ||||||||| ||||||    
T  26297546 cacatatcttgcatccaaactctaaat 26297572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 1025055 - 1024956
Alignment:
Q  31 ttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaa 130  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| |  ||| ||||| | |||||| ||||||||||| ||||||||    
T  1025055 ttgtttgttattattatgtatttttattaaacaaatattaattttttaatttaaaatatcaaccgttagaca-ttttttgccacatatcttgcatccaaa 1024957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 23655222 - 23655365
Alignment:
Q  34 tttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaact-tttttaccacatatcttacatccaaacc 132  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |  ||| |||||   | ||||| |||||| |||| |||| |||||    
T  23655222 tttgttattattatgtatttttattaaacaaatatttgatttttaatttaaaatttcaaccgttagattttctttttgccacatgtcttgcatctaaacc 23655321  T
Q  133 ctaaataaagtaaattgagcttagcctaaatggaacgtacccga 176  Q
    ||||||  | |||||  |||||| |||||||||| | |||||||    
T  23655322 ctaaatggaataaatgaagcttaacctaaatggagcatacccga 23655365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 32591316 - 32591247
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatt 81  Q
    ||||||||  || ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  32591316 gagaagaaaggagcatgatttgtttgttattattatgtatttttattaaacaaatatttattttttaatt 32591247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 42476033 - 42475890
Alignment:
Q  12 gagaagaagagaacatgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttac 111  Q
    ||||||||| |||||||| || ||| ||||||||||||||||| |||||||||||||           ||||||||||  | | ||||| | |||||| |    
T  42476033 gagaagaagggaacatgatttattttttattattatgtatttttattaaacaaatat-----------tttaaaatctcaatcgttagatatttttttgc 42475945  T
Q  112 cacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||| | |||| ||||||||||||||||| |||||||  |||||||||||||||||    
T  42475944 cacgtgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaatgga 42475890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 46993176 - 46993072
Alignment:
Q  71 gttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgt 170  Q
    |||||||||||||| ||||  ||| ||||| | |||||| | ||||||||| ||||||||||||||||| | ||||| ||||||| |||||||||| | |    
T  46993176 gttttttaatttaacatctcaaccgttagatatttttttgctacatatcttgcatccaaaccctaaatagaataaatggagcttaacctaaatggagcat 46993077  T
Q  171 acccg 175  Q
    |||||    
T  46993076 acccg 46993072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 21785854 - 21785799
Alignment:
Q  32 tgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatct 89  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  21785854 tgtttgttattattatgtattt--attaaacaaatatttattttttaatttaaaatct 21785799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 50544364 - 50544270
Alignment:
Q  72 ttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||||||||||||||||   || ||||| |  ||||| |||||| |||| ||||||||||||||||| | ||||| ||||||||||||||||||    
T  50544364 ttttttaatttaaaatctcatccgttagatatctttttgccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatgga 50544270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 53769532 - 53769593
Alignment:
Q  26 atgagttgtttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaat 87  Q
    |||| |||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||    
T  53769532 atgatttgtttgttattattatgtatttttattaaataaatatttatttttttatttaaaat 53769593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 11790052 - 11790136
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagct 153  Q
    |||||||||||||||||||||  ||| ||||| | |||||| |||||| |||| |||||||||||||||| || ||||| |||||    
T  11790052 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatgaaataaatggagct 11790136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 17914906 - 17915035
Alignment:
Q  35 ttgttattattatgtattttcattaaacaaatatttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccct 134  Q
    ||||| |||||||||||||  ||||||||||| |||  ||||||||||||||| |  ||| || || | |||||| |||||| |||| |||||||||  |    
T  17914906 ttgttgttattatgtatttctattaaacaaattttt--tttttaatttaaaatatcaaccgttggatatttttttgccacatgtcttgcatccaaacttt 17915003  T
Q  135 aaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||  ||||||| || |||||||||||||||    
T  17915004 aaatggagtaaatggaacttagcctaaatgga 17915035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 54316054 - 54316125
Alignment:
Q  104 ttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtacccg 175  Q
    |||||| |||||| |||| ||||||||||||||||  ||||||| |||||||||||||||||| | ||||||    
T  54316054 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccg 54316125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 1025096 - 1025190
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaat 163  Q
    |||||||||||||||||||||  ||| ||| | | ||||||| |||||||||| ||||||||| ||||||  |||||||  ||||||||| ||||    
T  1025096 ttgttttttaatttaaaatctcaaccgttatatatttttttatcacatatcttgcatccaaactctaaattgagtaaatgaagcttagccaaaat 1025190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 7062079 - 7061976
Alignment:
Q  73 tttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgtac 172  Q
    ||||||||| |||||||  ||| ||| | | |||||| |||||| |||| |||||||||| |||||  ||||||| ||| |||||||||||||| | |||    
T  7062079 tttttaattaaaaatctcaaccgttatatatttttttgccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagcatac 7061980  T
Q  173 ccga 176  Q
    ||||    
T  7061979 ccga 7061976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 50551478 - 50551539
Alignment:
Q  105 tttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatgga 166  Q
    ||||| |||||||||||||||||||||| |||||  |||||||  || ||||||||||||||    
T  50551478 tttttgccacatatcttacatccaaaccttaaatggagtaaataaagtttagcctaaatgga 50551539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 9551418 - 9551522
Alignment:
Q  72 ttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaataaagtaaattgagcttagcctaaatggaacgta 171  Q
    ||||||||||||||||||  ||| | ||| | |||||| ||| || |||| ||||||| ||||||||  ||||||| ||| |||| ||||||||| | ||    
T  9551418 ttttttaatttaaaatctcaaccgtgagatatttttttgccaaatgtcttccatccaagccctaaatggagtaaatggagtttagtctaaatggagcata 9551517  T
Q  172 cccga 176  Q
    |||||    
T  9551518 cccga 9551522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 32591338 - 32591417
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattaga-aacttttttaccacatatcttacatccaaaccctaaataaagtaaat 147  Q
    |||||||||||||||||||||  | ||||| | |  ||||||||||||| ||||||||||||| |||||||  |||||||    
T  32591338 ttgttttttaatttaaaatctcaatcattaaatattttttttaccacatgtcttacatccaaatcctaaattgagtaaat 32591417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 5466081 - 5466122
Alignment:
Q  111 ccacatatcttacatccaaaccctaaataaagtaaattgagc 152  Q
    |||||| |||||||||||||||||||||| ||||||| ||||    
T  5466081 ccacatgtcttacatccaaaccctaaatagagtaaatagagc 5466122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 17914824 - 17914755
Alignment:
Q  69 ttgttttttaatttaaaatcttgaccattagaaacttttttaccacatatcttacatccaaaccctaaat 138  Q
    |||||||||||||||||||||  ||  || || | |||||| |||||| |||| ||||||||||||||||    
T  17914824 ttgttttttaatttaaaatctcaactgttggatatttttttgccacatgtcttgcatccaaaccctaaat 17914755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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