View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6945_high_4 (Length: 315)
Name: NF6945_high_4
Description: NF6945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6945_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 42676935 - 42677222
Alignment:
| Q |
13 |
aatattccctctaaaagttctat----ttcaatgaaataaatactaaccaaatctttttataaaagttata--tttgaatcaaataattagtaaatcttt |
106 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42676935 |
aatattccctctaaaagttatatatatttcaatgaaataa----taaccaaatctttttataaaagttatatatttgaatcaaataattagtaaatcttt |
42677030 |
T |
|
| Q |
107 |
ttatgacaaacttggagaccactctaagcaatatatagcgtctttcctccactttccctgtcattagtcattactaatatcgatcacactttggtgatcg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42677031 |
ttatgacaaacttggagaccactctaagcaatatatagcgtctttcctccactttccctgtcattagtcattactaatatcgatcacactttggtgatcg |
42677130 |
T |
|
| Q |
207 |
tgctccttctctctctcataaaacccttattctttgctgatcgtgctcctaaacaaagcccttattcttgatcaaaggaagtgtttgagaag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42677131 |
tgctccttctctctctcataaaacccttattctttgctgatcgtgctcctaaacaaagcccttattcttgatcaaaggaagtgtttaagaag |
42677222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University