View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6945_high_6 (Length: 277)

Name: NF6945_high_6
Description: NF6945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6945_high_6
NF6945_high_6
[»] chr4 (13 HSPs)
chr4 (124-263)||(35283445-35283584)
chr4 (128-263)||(35277934-35278069)
chr4 (1-121)||(35283625-35283737)
chr4 (124-258)||(35241152-35241286)
chr4 (1-79)||(35241357-35241435)
chr4 (129-249)||(35271266-35271386)
chr4 (152-248)||(35275295-35275391)
chr4 (1-72)||(35287195-35287266)
chr4 (1-78)||(35278148-35278226)
chr4 (1-76)||(35271467-35271542)
chr4 (21-78)||(35275487-35275544)
chr4 (153-247)||(35286991-35287085)
chr4 (124-173)||(35253480-35253529)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 35283584 - 35283445
Alignment:
Q  124 ggaggaattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcg 223  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35283584 ggaggaattctttgctcgtccgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagttttacactcg 35283485  T
Q  224 tcttttagtattcaaaactgaataacaactactcacaggt 263  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35283484 tcttttagtattcaaaactgaataacaactactcacaggt 35283445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 128 - 263
Target Start/End: Complemental strand, 35278069 - 35277934
Alignment:
Q  128 gaattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtctt 227  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  35278069 gaattctttgctcgtctgatacctgtgatttaattaaagtatgggatctcaatcagcgtgtcataatgaagacctttatggtgagtcctacactcgtctt 35277970  T
Q  228 ttagtattcaaaactgaataacaactactcacaggt 263  Q
    ||||||||||||||||||||||||||||||||||||    
T  35277969 ttagtattcaaaactgaataacaactactcacaggt 35277934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 35283737 - 35283625
Alignment:
Q  1 tactcactcttctgcattagtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatatatatatgtatatgtattgctcgagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  35283737 tactcactcttctgcattagtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatat--------atatgtattgctcgagag 35283646  T
Q  101 agtgttgtgcaatgttgttgg 121  Q
    |||||||||||||||||||||    
T  35283645 agtgttgtgcaatgttgttgg 35283625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 35241286 - 35241152
Alignment:
Q  124 ggaggaattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcg 223  Q
    ||||||| | |||||||||| |||||| || ||||||||||||||||||| |||||||||||||||| ||| ||  ||| ||| |||||||||||||||     
T  35241286 ggaggaactctttgctcgtccgataccagtaatgtaattaaagtatgggatctcaatcagcgtgtcaggattaaccactgtattgtgagtcttacactca 35241187  T
Q  224 tcttttagtattcaaaactgaataacaactactca 258  Q
    ||||||||||||||||||||||| |||||||||||    
T  35241186 tcttttagtattcaaaactgaatgacaactactca 35241152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35241435 - 35241357
Alignment:
Q  1 tactcactcttctgcattagtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatatatata 79  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  35241435 tactcactcttctgcattagtccttccattgtaacttgaggattgattcattatgttttgatgtttcatgatatatata 35241357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 35271386 - 35271266
Alignment:
Q  129 aattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtcttt 228  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||| ||| | ||| |||||| ||| || |||||||  |||||||| |||||| | |||    
T  35271386 aattctttgctcgtctgatacatgtgatgcaattaaagtatgggatctcgaacagtgtgtcacgattaacaactttacagtgagtctaacactcatattt 35271287  T
Q  229 tagtattcaaaactgaataac 249  Q
    |||||||||||||||||||||    
T  35271286 tagtattcaaaactgaataac 35271266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 35275391 - 35275295
Alignment:
Q  152 gtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtcttttagtattcaaaactgaataa 248  Q
    |||||| ||||||| ||||||| |||||||||||||||||||| |  ||| ||| ||||||||| |||||  | |||||||||||||||||||||||    
T  35275391 gtgatgcaattaaattatgggatctcaatcagcgtgtcatgattagcaacattaaggtgagtctgacacttatattttagtattcaaaactgaataa 35275295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35287266 - 35287195
Alignment:
Q  1 tactcactcttctgcattagtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgat 72  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| | | |||||| ||| |||||||||||    
T  35287266 tactcactcttctgcattagtccttcctttgtaacttgaggattgatgccttatgtcttgctgtttcatgat 35287195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35278226 - 35278148
Alignment:
Q  1 tactcactcttctgcattagtccttccttt-gtaacttgatgattggttcattatgttttgatgtttcatgatatatat 78  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||  ||| || |||||||||||||||||||| ||||    
T  35278226 tactcactctgctgcattagtccttccttttgtaacttgatgattaattcgttgtgttttgatgtttcatgatacatat 35278148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35271542 - 35271467
Alignment:
Q  1 tactcactcttctgcattagtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatatat 76  Q
    |||||||||||||||| ||||| |||||||||||||    ||||  ||||||||||||||||||||||||||||||    
T  35271542 tactcactcttctgcaatagtctttcctttgtaactcatggattaattcattatgttttgatgtttcatgatatat 35271467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 35275544 - 35275487
Alignment:
Q  21 tccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatatatat 78  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  35275544 tccttcctttgtaacttgaggattaattcattatgttttgatgtttcatcatatatat 35275487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 35287085 - 35286991
Alignment:
Q  153 tgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtcttttagtattcaaaactgaata 247  Q
    ||||| |||| |||||||||| ||||||| | || | | ||| || |||| || |||||||||||||||| |||||| ||||||||||| |||||    
T  35287085 tgatggaattcaagtatgggatctcaatcggtgtattaagattaaaaactgtaaggtgagtcttacactcctctttttgtattcaaaacagaata 35286991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 35253529 - 35253480
Alignment:
Q  124 ggaggaattatttgctcgtctgatacctgtgatgtaattaaagtatggga 173  Q
    |||||| || ||||| |||| |||||||||||||||||||||||||||||    
T  35253529 ggaggagttctttgcacgtccgatacctgtgatgtaattaaagtatggga 35253480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University