View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6945_high_8 (Length: 251)

Name: NF6945_high_8
Description: NF6945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6945_high_8
NF6945_high_8
[»] chr7 (4 HSPs)
chr7 (1-237)||(43702660-43702905)
chr7 (63-212)||(18947286-18947443)
chr7 (58-195)||(18948181-18948327)
chr7 (26-62)||(29723181-29723217)
[»] chr2 (3 HSPs)
chr2 (62-192)||(6204506-6204645)
chr2 (26-62)||(36963356-36963392)
chr2 (118-170)||(39062852-39062904)
[»] chr3 (4 HSPs)
chr3 (65-191)||(46461865-46461999)
chr3 (26-62)||(46878716-46878752)
chr3 (26-62)||(49319571-49319607)
chr3 (63-99)||(39232331-39232367)
[»] chr5 (1 HSPs)
chr5 (60-121)||(29984836-29984897)
[»] chr8 (2 HSPs)
chr8 (63-122)||(43235431-43235490)
chr8 (118-153)||(42578773-42578808)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43702660 - 43702905
Alignment:
Q  1 aaaatgctgcagatgatccatttcctaagaattacttcaactacccatgcactgtttaaaacgagtgcatctttgctccatttaaagagcctccatttat 100  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  43702660 aaaatgctgcagatgatccatttcctaataattacttcaattacccatgcactatttaaaacgagtgcatctttgctccatttaaggagcctccatttat 43702759  T
Q  101 accaattcacttcatag---------atgtggcaaaaataaaatcaatggctgagagtaaaatgtttagaaaaagcattattttaccgaaaaataaacac 191  Q
    || ||||||||||||||         |||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43702760 acaaattcacttcatagatgtttcatatgtggcaaaaataaaataaatgactgagagtaaaatgtttagaaaaaacattattttaccgaaaaataaacac 43702859  T
Q  192 acaccctctgctcttcctcctccaatgagacacatcatgcactcct 237  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||    
T  43702860 acaccctctgctcttcctcctccaataagacacatcatgtactcct 43702905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 18947286 - 18947443
Alignment:
Q  63 gagtgcatctttgctccatttaaagagcctccatttataccaattcacttcatag---------atgtggcaaaaataaaatcaatggctgagagtaaaa 153  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||||||||||         |||||||||| |||||| |||||| ||||| || ||    
T  18947286 gagtgcatctttgctccatttagggagcctccatttataccatttcacttcatagatgttggacatgtggcaaatataaaaccaatggttgagattagaa 18947385  T
Q  154 tgtttagaaaaagcattattttaccgaaaaataaacacacaccctctgctcttcctcct 212  Q
     | ||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||    
T  18947386 ggcttagaaaaagcatttatttaccggaaaataaacacac-gcctctgctcttcctcct 18947443  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 195
Target Start/End: Complemental strand, 18948327 - 18948181
Alignment:
Q  58 aaaacgagtgcatctttgctccatttaaagagcctccatttataccaattcacttcat---------agatgtggcaaaaataaaatcaatggctgagag 148  Q
    |||| ||||||||||||||||||||||  |||||| ||||||||||| ||||||||||         | |||||||||| ||||||| |||||||||||     
T  18948327 aaaaagagtgcatctttgctccatttagggagccttcatttataccatttcacttcatggatgtttgacatgtggcaaatataaaattaatggctgagat 18948228  T
Q  149 taaaatgtttagaaaaagcattattttaccgaaaaataaacacacac 195  Q
    ||||| | ||||||||| ||||  ||||| |||||| ||| ||||||    
T  18948227 taaaaggcttagaaaaaacatttctttactgaaaaacaaaaacacac 18948181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 29723181 - 29723217
Alignment:
Q  26 taagaattacttcaactacccatgcactgtttaaaac 62  Q
    |||||||||||||||||||||||||||| ||||||||    
T  29723181 taagaattacttcaactacccatgcactatttaaaac 29723217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 6204506 - 6204645
Alignment:
Q  62 cgagtgcatctttgctccatttaaagagcctccatttataccaattcacttcatag---------atgtggcaaaaataaaatcaatggctgagagtaaa 152  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||         |||||||||| |||||||||||||| |||| ||||    
T  6204506 cgagagcatctttgctccatttaaggagcctccatttataccaattcacttcacagatgtttaacatgtggcaaatataaaatcaatggcagagattaaa 6204605  T
Q  153 atgtttagaaaaagcattattttaccgaaaaataaacaca 192  Q
    | ||||  ||||| ||||  ||||| | ||||||||||||    
T  6204606 aggttttaaaaaatcatttgtttactggaaaataaacaca 6204645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 36963356 - 36963392
Alignment:
Q  26 taagaattacttcaactacccatgcactgtttaaaac 62  Q
    |||||||||||||||||||||||||||| ||||||||    
T  36963356 taagaattacttcaactacccatgcactatttaaaac 36963392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 39062904 - 39062852
Alignment:
Q  118 atgtggcaaaaataaaatcaatggctgagagtaaaatgtttagaaaaagcatt 170  Q
    ||||||||| ||||||||||||||||  || ||||| |||| |||||||||||    
T  39062904 atgtggcaacaataaaatcaatggctaggattaaaaggtttggaaaaagcatt 39062852  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 46461865 - 46461999
Alignment:
Q  65 gtgcatctttgctccatttaaagagcctccatttataccaattcacttcatagatgt---------ggcaaaaataaaatcaatggctgagagtaaaatg 155  Q
    |||||||||||||||||| | ||||||||||||||||||| |||| ||||| |||||         |||||| ||||||||||||||||||| ||||| |    
T  46461865 gtgcatctttgctccattaagagagcctccatttataccatttcatttcatggatgtttgacatgtggcaaatataaaatcaatggctgagattaaaa-g 46461963  T
Q  156 tttagaaaaagcattattttaccgaaaaataaacac 191  Q
    |||||||||||||||  |||||   |||||||||||    
T  46461964 tttagaaaaagcatttgtttactacaaaataaacac 46461999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 46878716 - 46878752
Alignment:
Q  26 taagaattacttcaactacccatgcactgtttaaaac 62  Q
    |||||||||||||||||||||||||||| ||||||||    
T  46878716 taagaattacttcaactacccatgcactatttaaaac 46878752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 49319571 - 49319607
Alignment:
Q  26 taagaattacttcaactacccatgcactgtttaaaac 62  Q
    |||||||||||||||||||||||||||| ||||||||    
T  49319571 taagaattacttcaactacccatgcactatttaaaac 49319607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 39232367 - 39232331
Alignment:
Q  63 gagtgcatctttgctccatttaaagagcctccattta 99  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  39232367 gagtccatctttgctccatttagagagcctccattta 39232331  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 29984897 - 29984836
Alignment:
Q  60 aacgagtgcatctttgctccatttaaagagcctccatttataccaattcacttcatagatgt 121  Q
    |||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |||||    
T  29984897 aacgagtgcatctttgcttcctttagagagcctccatttataccaattcacttcatggatgt 29984836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 43235431 - 43235490
Alignment:
Q  63 gagtgcatctttgctccatttaaagagcctccatttataccaattcacttcatagatgtg 122  Q
    ||||||||||||||||||||||   ||||||||||||| ||  |||||||||||||||||    
T  43235431 gagtgcatctttgctccatttaccaagcctccatttatcccttttcacttcatagatgtg 43235490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 42578773 - 42578808
Alignment:
Q  118 atgtggcaaaaataaaatcaatggctgagagtaaaa 153  Q
    |||||||||||||||||||||||||||||| |||||    
T  42578773 atgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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