View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6945_high_9 (Length: 247)

Name: NF6945_high_9
Description: NF6945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6945_high_9
NF6945_high_9
[»] chr7 (14 HSPs)
chr7 (1-138)||(43701649-43701786)
chr7 (7-138)||(29723053-29723185)
chr7 (184-231)||(43701557-43701604)
chr7 (184-231)||(29722961-29723008)
chr7 (184-231)||(17904169-17904216)
chr7 (184-231)||(26770185-26770232)
chr7 (184-231)||(29427388-29427435)
chr7 (184-231)||(37179555-37179602)
chr7 (184-231)||(46467559-46467606)
chr7 (200-231)||(6387932-6387963)
chr7 (184-231)||(29891050-29891097)
chr7 (184-231)||(31503161-31503208)
chr7 (184-231)||(33379191-33379238)
chr7 (184-229)||(9876271-9876316)
[»] chr3 (17 HSPs)
chr3 (7-138)||(49319445-49319575)
chr3 (7-138)||(46878589-46878720)
chr3 (188-231)||(49319353-49319396)
chr3 (184-231)||(1352220-1352267)
chr3 (184-231)||(18996973-18997020)
chr3 (184-231)||(18999512-18999559)
chr3 (184-231)||(28228442-28228489)
chr3 (184-231)||(29371762-29371809)
chr3 (184-231)||(39528755-39528802)
chr3 (61-115)||(34667591-34667645)
chr3 (194-231)||(32677711-32677748)
chr3 (194-231)||(39807213-39807250)
chr3 (194-231)||(41349605-41349642)
chr3 (194-228)||(36738068-36738102)
chr3 (194-228)||(55365917-55365951)
chr3 (194-231)||(22157264-22157301)
chr3 (184-232)||(38855322-38855370)
[»] chr2 (9 HSPs)
chr2 (7-137)||(36963230-36963360)
chr2 (53-138)||(10118546-10118631)
chr2 (184-231)||(10118676-10118723)
chr2 (184-227)||(15233765-15233808)
chr2 (184-231)||(35793130-35793177)
chr2 (184-231)||(43041073-43041120)
chr2 (194-231)||(44104790-44104827)
chr2 (194-230)||(31296090-31296126)
chr2 (199-231)||(41252421-41252453)
[»] chr8 (8 HSPs)
chr8 (53-138)||(27024531-27024616)
chr8 (184-231)||(27024439-27024486)
chr8 (184-231)||(2509020-2509067)
chr8 (184-231)||(13469729-13469776)
chr8 (184-231)||(25106217-25106264)
chr8 (184-231)||(33837953-33838000)
chr8 (184-231)||(45334500-45334547)
chr8 (199-231)||(9739991-9740023)
[»] chr4 (10 HSPs)
chr4 (53-138)||(19256284-19256369)
chr4 (184-231)||(19256192-19256239)
chr4 (194-231)||(36016285-36016322)
chr4 (184-228)||(30469392-30469436)
chr4 (184-227)||(34334342-34334385)
chr4 (194-231)||(8956010-8956047)
chr4 (194-231)||(39481909-39481946)
chr4 (194-231)||(45590748-45590785)
chr4 (203-231)||(19257103-19257131)
chr4 (184-232)||(49162107-49162155)
[»] chr5 (9 HSPs)
chr5 (53-138)||(42793138-42793223)
chr5 (184-234)||(42793043-42793093)
chr5 (184-231)||(41610641-41610688)
chr5 (184-231)||(4145700-4145747)
chr5 (184-231)||(12399170-12399217)
chr5 (184-231)||(23090304-23090351)
chr5 (184-231)||(34208544-34208591)
chr5 (184-231)||(29874960-29875007)
chr5 (204-232)||(4145938-4145966)
[»] chr1 (10 HSPs)
chr1 (53-138)||(33020304-33020389)
chr1 (184-231)||(4055490-4055537)
chr1 (184-231)||(4817275-4817322)
chr1 (184-231)||(33020212-33020259)
chr1 (184-231)||(47669125-47669172)
chr1 (194-231)||(18126857-18126894)
chr1 (184-231)||(1236254-1236301)
chr1 (184-231)||(9831509-9831556)
chr1 (184-227)||(46220269-46220312)
chr1 (199-227)||(1749562-1749590)
[»] chr6 (6 HSPs)
chr6 (184-231)||(27312340-27312387)
chr6 (184-231)||(32274440-32274487)
chr6 (194-231)||(29302505-29302542)
chr6 (49-138)||(34045418-34045509)
chr6 (194-231)||(8504936-8504973)
chr6 (199-231)||(12174706-12174738)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 43701786 - 43701649
Alignment:
Q  1 ccatactcttattatttcagattactactactccacaattgtactcattctaaattttttaacccattttttaattcaattgtgataagtcaatagttcc 100  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43701786 ccatactcttattatttcagattactactcctcgacaattgtactcattctaaattttttaacccattttttaattcaattgtgataagtcaatagtccc 43701687  T
Q  101 aacttatttaattattaaagtgtgtttttcaacaaggg 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43701686 aacttatttaattattaaagtgtgtttttcaacaaggg 43701649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 29723185 - 29723053
Alignment:
Q  7 tcttattatttcagattactactactccacaattgtactcattctaaattttttaacccatttttt-aattcaattgtgataagtcaatagttccaactt 105  Q
    ||||||||||||||||||||| | ||   ||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||  ||||||    
T  29723185 tcttattatttcagattactattcctatgcaattgttctccttctaaagtttttaacccatttttttaattcaattgtgataagtcaatagtcacaactt 29723086  T
Q  106 atttaattattaaagtgtgtttttcaacaaggg 138  Q
    |||||||||||||||||||||||||||||||||    
T  29723085 atttaattattaaagtgtgtttttcaacaaggg 29723053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 43701604 - 43701557
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43701604 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 43701557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 29723008 - 29722961
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  29723008 tttggaataaagtttaagttctaaaatatcaaaagaaaaggaatggag 29722961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 17904216 - 17904169
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  17904216 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 17904169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 26770232 - 26770185
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  26770232 tttggaatttagttgaagttctaaaacatcaaaagaaaaggaatggag 26770185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 29427388 - 29427435
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  29427388 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 29427435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 37179555 - 37179602
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  37179555 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 37179602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 46467559 - 46467606
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  46467559 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 46467606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 6387932 - 6387963
Alignment:
Q  200 agttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||||||||||||||||||||||||||    
T  6387932 agttctaaaacatcaaaagaaaaggaatggag 6387963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 29891050 - 29891097
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| ||||| |||||||||||||||||||||||||||    
T  29891050 tttggaatatagttgaagttttaaaacatcaaaagaaaaggaatggag 29891097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 31503161 - 31503208
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||| ||||    
T  31503161 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaacggag 31503208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 33379191 - 33379238
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| ||| ||||| ||||||||||||||||||||||||| |||||||    
T  33379191 tttgaaatcaagttgaagttctaaaacatcaaaagaaaagaaatggag 33379238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 9876316 - 9876271
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatgg 229  Q
    ||||||||  |||| ||||| |||||||||||||||||||||||||    
T  9876316 tttggaatatagttgaagttttaaaacatcaaaagaaaaggaatgg 9876271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 49319575 - 49319445
Alignment:
Q  7 tcttattatttcagattactactactccacaattgtactcattctaaattttttaacccattttttaattcaattgtgataagtcaatagttccaactta 106  Q
    ||||||||||||||||||||||| |||  ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49319575 tcttattatttcagattactactcctcggcaattgtactccttctaaattttttaaccc-ttttttaattcaattgtgataagtcaatagttccaactta 49319477  T
Q  107 tttaattattaaagtgtgtttttcaacaaggg 138  Q
    ||||||||||| ||||||||||||||| ||||    
T  49319476 tttaattattagagtgtgtttttcaacgaggg 49319445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 46878720 - 46878589
Alignment:
Q  7 tcttattatttcagattactactactccacaattgtactcattctaaattttttaacccattttttaattcaattgtgataagtcaatagttccaactta 106  Q
    ||||||||||||||||||||||| |||  |  |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||     
T  46878720 tcttattatttcagattactactcctcggctgttgtactccttctaaattttttaatccattttttaatttaattgtgataagtcaatagtcccaacttt 46878621  T
Q  107 tttaattattaaagtgtgtttttcaacaaggg 138  Q
    ||||||||||||||||||||||||||||||||    
T  46878620 tttaattattaaagtgtgtttttcaacaaggg 46878589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 49319396 - 49319353
Alignment:
Q  188 gaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  49319396 gaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 49319353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 1352220 - 1352267
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  1352220 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 1352267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 18997020 - 18996973
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  18997020 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 18996973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 18999559 - 18999512
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  18999559 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 18999512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 28228489 - 28228442
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  28228489 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 28228442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 29371762 - 29371809
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  29371762 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 29371809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 39528802 - 39528755
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  39528802 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 39528755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 34667591 - 34667645
Alignment:
Q  61 aacccattttttaattcaattgtgataagtcaatagttccaacttatttaattat 115  Q
    ||||||| ||||||||||||||||||||||||| |||   |||||||||||||||    
T  34667591 aacccatcttttaattcaattgtgataagtcaaaagtcataacttatttaattat 34667645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 32677711 - 32677748
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| |||||||||||||||||||||||||||||||||    
T  32677711 agttgaagttctaaaacatcaaaagaaaaggaatggag 32677748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 39807213 - 39807250
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39807213 agttgaagttctaaaacatcaaaagaaaaggaatggag 39807250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 41349605 - 41349642
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| |||||||||||||||||||||||||||||||||    
T  41349605 agttgaagttctaaaacatcaaaagaaaaggaatggag 41349642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 36738068 - 36738102
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatg 228  Q
    |||| ||||||||||||||||||||||||||||||    
T  36738068 agttaaagttctaaaacatcaaaagaaaaggaatg 36738102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 55365951 - 55365917
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatg 228  Q
    |||| ||||||||||||||||||||||||||||||    
T  55365951 agttgaagttctaaaacatcaaaagaaaaggaatg 55365917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 22157301 - 22157264
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  22157301 agttgaagttctaaaacatcaaaagaaaagaaatggag 22157264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 38855370 - 38855322
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggagt 232  Q
    ||||||||  |||| | ||| ||||||||||||||||||||||||||||    
T  38855370 tttggaatatagttgatgttttaaaacatcaaaagaaaaggaatggagt 38855322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 36963360 - 36963230
Alignment:
Q  7 tcttattatttcagattactactactccacaattgtactcattctaaattttttaacccattttttaattcaattgtgataagtcaatagttccaactta 106  Q
    ||||||||||||| ||||||| | |||  || |||||||   |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  36963360 tcttattatttcatattactatttctcggcagttgtacttcatctaaattttttaacctattttttaattcagttgtgataagtcaatagtcccaactta 36963261  T
Q  107 tttaattattaaagtgtgtttttcaacaagg 137  Q
    |||||||||||||||||||||||||||||||    
T  36963260 tttaattattaaagtgtgtttttcaacaagg 36963230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 10118546 - 10118631
Alignment:
Q  53 aattttttaacccattttttaattcaattgtgataagtcaatagttccaacttatttaattattaaagtgtgtttttcaacaaggg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||    
T  10118546 aattttttaacccattttttaattcaattgtgataagtcaatagtctcaacttatttaattattaaagtgtgtttttccacaaggg 10118631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 10118676 - 10118723
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  10118676 tttggaataaagtttaagctctaaaatatcaaaagaaaaggaatggag 10118723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 15233808 - 15233765
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaat 227  Q
    ||||||||  |||| |||||||||||||||||||||||||||||    
T  15233808 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaat 15233765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 35793130 - 35793177
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||| ||||||||    
T  35793130 tttggaatatagttgaagttctaaaacatcaaaagaaaaagaatggag 35793177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 43041073 - 43041120
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| ||||| |||||||||||||||||||||||||||    
T  43041073 tttggaatatagttgaagttttaaaacatcaaaagaaaaggaatggag 43041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 44104790 - 44104827
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  44104790 agttgaagttctaaaacatcaaaagaaaaggaacggag 44104827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 31296126 - 31296090
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatgga 230  Q
    |||| |||||||||||||||||||||||| |||||||    
T  31296126 agttgaagttctaaaacatcaaaagaaaaagaatgga 31296090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 41252453 - 41252421
Alignment:
Q  199 aagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||||||||||||| ||||||||||||||||||    
T  41252453 aagttctaaaacataaaaagaaaaggaatggag 41252421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 27024616 - 27024531
Alignment:
Q  53 aattttttaacccattttttaattcaattgtgataagtcaatagttccaacttatttaattattaaagtgtgtttttcaacaaggg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||    
T  27024616 aattttttaacccattttttaattcaattgtgataagtcaatagtctcaacttatttaattattaaagtgtgtttttccacaaggg 27024531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 27024486 - 27024439
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  27024486 tttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggag 27024439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 2509020 - 2509067
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  2509020 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 2509067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 13469729 - 13469776
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  13469729 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 13469776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 25106264 - 25106217
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  25106264 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 25106217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 33837953 - 33838000
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  33837953 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 33838000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 45334500 - 45334547
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  45334500 tttggaatatagttaaagttctaaaacatcaaaagaaaaggaatggag 45334547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 9740023 - 9739991
Alignment:
Q  199 aagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||||||||||||||||||||||||||||||||    
T  9740023 aagttctaaaacatcaaaagaaaaggaatggag 9739991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 19256369 - 19256284
Alignment:
Q  53 aattttttaacccattttttaattcaattgtgataagtcaatagttccaacttatttaattattaaagtgtgtttttcaacaaggg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||    
T  19256369 aattttttaacccattttttaattcaattgtgataagtcaatagtctcaacttatttaattattaaagtgtgtttttccacaaggg 19256284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 19256239 - 19256192
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  19256239 tttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggag 19256192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 36016322 - 36016285
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| |||||||||||||||||||||||||||||||||    
T  36016322 agttgaagttctaaaacatcaaaagaaaaggaatggag 36016285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 30469392 - 30469436
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatg 228  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||    
T  30469392 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatg 30469436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 34334385 - 34334342
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaat 227  Q
    ||||||||  |||| |||||||||||||||||||||||||||||    
T  34334385 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaat 34334342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 8956010 - 8956047
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  8956010 agttgaagttctaaaacatcaaaaaaaaaggaatggag 8956047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 39481946 - 39481909
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  39481946 agttgaagttctaaaacatcaaaagaaaagaaatggag 39481909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 45590785 - 45590748
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  45590785 agttgaagttctaaaacatcaaaagaaaatgaatggag 45590748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 19257103 - 19257131
Alignment:
Q  203 tctaaaacatcaaaagaaaaggaatggag 231  Q
    |||||||||||||||||||||||||||||    
T  19257103 tctaaaacatcaaaagaaaaggaatggag 19257131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 49162155 - 49162107
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggagt 232  Q
    ||||||||  |||| ||||||| |||||||||||||||| |||||||||    
T  49162155 tttggaatatagttgaagttctgaaacatcaaaagaaaatgaatggagt 49162107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 42793223 - 42793138
Alignment:
Q  53 aattttttaacccattttttaattcaattgtgataagtcaatagttccaacttatttaattattaaagtgtgtttttcaacaaggg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| |||||||    
T  42793223 aattttttaacccattttttaattcaattgtgataagtcaatagtctcaacttatttaattattaaagtatgtttttccacaaggg 42793138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 42793093 - 42793043
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggagtga 234  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  42793093 tttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagtga 42793043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 41610641 - 41610688
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||    
T  41610641 tttggaataaagtttaagttctaaaacatcaaaagaaaagaaatggag 41610688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 4145747 - 4145700
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  4145747 tttggaatatagttaaagttctaaaacatcaaaagaaaaggaatggag 4145700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 12399170 - 12399217
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  12399170 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 12399217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 23090351 - 23090304
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  23090351 tttggaatacagttgaagttctaaaacatcaaaagaaaaggaatggag 23090304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 34208591 - 34208544
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  34208591 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 34208544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 29875007 - 29874960
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||| ||||||||    
T  29875007 tttggaatatagttgaagttctaaaacatcaaaagaaaaagaatggag 29874960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 4145938 - 4145966
Alignment:
Q  204 ctaaaacatcaaaagaaaaggaatggagt 232  Q
    |||||||||||||||||||||||||||||    
T  4145938 ctaaaacatcaaaagaaaaggaatggagt 4145966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 33020389 - 33020304
Alignment:
Q  53 aattttttaacccattttttaattcaattgtgataagtcaatagttccaacttatttaattattaaagtgtgtttttcaacaaggg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||| |||||||    
T  33020389 aattttttaacccattttttaattcaattgtgataagtcaatagtctcaatttatttaattattaaagtgtgtttttccacaaggg 33020304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 4055537 - 4055490
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  4055537 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 4055490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 4817322 - 4817275
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  4817322 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 4817275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 33020259 - 33020212
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||||||  ||||||||| |||||||||||||||||||||||||||||    
T  33020259 tttggaaaaaagtttaagctctaaaacatcaaaagaaaaggaatggag 33020212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 47669172 - 47669125
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  47669172 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 47669125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 18126894 - 18126857
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18126894 agttgaagttctaaaacatcaaaagaaaaggaatggag 18126857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 1236254 - 1236301
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||| ||||||||    
T  1236254 tttggaatatagttaaagttctaaaacatcaaaagaaaatgaatggag 1236301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 9831556 - 9831509
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| || ||||||||||||||||||||||||||||||    
T  9831556 tttggaatatagttgaaattctaaaacatcaaaagaaaaggaatggag 9831509  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 46220312 - 46220269
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaat 227  Q
    ||||||||  |||| |||||||||||||||||||||||||||||    
T  46220312 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaat 46220269  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 1749562 - 1749590
Alignment:
Q  199 aagttctaaaacatcaaaagaaaaggaat 227  Q
    |||||||||||||||||||||||||||||    
T  1749562 aagttctaaaacatcaaaagaaaaggaat 1749590  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 27312340 - 27312387
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  27312340 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 27312387  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 32274487 - 32274440
Alignment:
Q  184 tttggaatgaagtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  32274487 tttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 32274440  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 29302505 - 29302542
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| |||||||||||||||||||||||||||||||||    
T  29302505 agttgaagttctaaaacatcaaaagaaaaggaatggag 29302542  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 34045418 - 34045509
Alignment:
Q  49 tctaaattttttaacccattttttaattcaattgtgataagtcaatagttccaacttatttaattat--taaagtgtgtttttcaacaaggg 138  Q
    ||||||| ||||||| | | ||||| |||||||||| ||||| || |||  ||||||||||||||||  ||  |||||||||||||||||||    
T  34045418 tctaaatcttttaactcgtcttttatttcaattgtgttaagtgaaaagtcacaacttatttaattatcgtatggtgtgtttttcaacaaggg 34045509  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 8504936 - 8504973
Alignment:
Q  194 agtttaagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  8504936 agttgaagttctaaaacatcaaaagaaaatgaatggag 8504973  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 12174738 - 12174706
Alignment:
Q  199 aagttctaaaacatcaaaagaaaaggaatggag 231  Q
    |||||||||||||| ||||||||||||||||||    
T  12174738 aagttctaaaacattaaaagaaaaggaatggag 12174706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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