View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6945_low_1 (Length: 685)

Name: NF6945_low_1
Description: NF6945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6945_low_1
NF6945_low_1
[»] chr4 (1 HSPs)
chr4 (15-671)||(42910353-42911009)


Alignment Details
Target: chr4 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 15 - 671
Target Start/End: Original strand, 42910353 - 42911009
Alignment:
Q  15 gatgaaatcccaaacctattatgataaacaaattaatgtatcatcttcattaaaccattgcacatgaaaattttacaagattcttaatacataatctaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42910353 gatgaaatcccaaacctattatgataaacaaattaatgtatcatcttcattaaaccattgcacatgaaaattttacaagattcttaatacataatctaat 42910452  T
Q  115 attgatcaccttgcatgttccgtcaagagagcttgatattaaaattgaaaagcaactgcaagttgtagctaaaagacctgttatggaggacatgtgcccc 214  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42910453 attgattaccttgcatgttccatcaagagagcttgatattaaaattgaaaagcaactgcaagttgtagctaaaagacctgttatggaggacatgtgcccc 42910552  T
Q  215 gacaaacaatgtaataaaggattcgagctttctgtttcttccacatctagcaaacttcgattgaatcgagtacaacagatgcatcaattaaatataaagg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42910553 gacaaacaatgtaataaaggattcgagctttctgtttcttccacatctagcaaacttcgattgaatcgagtacaacagatgcatcaattaaatataaagg 42910652  T
Q  315 ttcttataattcttaatatctactaatataatacatttatatttgagtccaaaagttacataggaaaaacaagttcaatccttaccttatcatggaccaa 414  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42910653 ttcttataattcttaatatctactaatctaatacatttatatttgagtccaaaagttacataggaaaaacaagttcaatccttaccttatcatggaccaa 42910752  T
Q  415 acacatatcataccatcaattgacccagaaataagaagagaatcatcattagaaaatattatgtggtctatagatttataatgagctgtccaagtcttca 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42910753 acacatatcataccatcaattgacccagaaataagaagagaatcatcattagaaaatattatgtggtctacagatttataatgagctgtccaagtcttca 42910852  T
Q  515 acaattttccactagtcacctacaattcatcattaacaacacaatttcacaaacaaaataatctaaatatagcattaaaccttacatgtaagggagtctt 614  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42910853 acaattttccactagtcacctacaattcatcataaacaacacaatttcacaaacaaaataatccaaatatagcattaaaccttacatgtaagggagtctt 42910952  T
Q  615 aggatcaaatttttgatcaaacattcacccattttaagtcatattcaataaactatt 671  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42910953 aggatcaaatttttgatcaaacattcacccattttaagtcatattcaataaattatt 42911009  T

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