View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6945_low_5 (Length: 334)
Name: NF6945_low_5
Description: NF6945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6945_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 10 - 322
Target Start/End: Original strand, 29561656 - 29561967
Alignment:
| Q |
10 |
acctgtgtgaaagaaaatacaaaagttaatgcaaacaggaagcgccagaaataaacgactagaagtaaacacggtcctaagaggttgttgaatgtaagaa |
109 |
Q |
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| T |
29561656 |
acctgtgtgaaagaaaatacaaa-gttaatgcaaacaggaagcgccagaaataaacgactagaagtaaacacggtcctaagaggttgttgaatgtaagaa |
29561754 |
T |
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| Q |
110 |
taaactttatcttacatcattgtgtagagattggatttgagaatcagaatgcaaggcgcgatctttccagaaatctcgtgaagcctgcagttcttccatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561755 |
taaactttatcttacatcattgtgtagagattggatttgagaatcagaatgcaaggcgcgatctttccagaaatctcgtgaagcctgcagttcttccatc |
29561854 |
T |
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| Q |
210 |
tcttccctcacctggcctagcatctcctgcatttgggaccattgttctgtctcaactctaacttgctccactattcttcttacaatagtcttgcaatgtc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561855 |
tcttccctcacctggcctagcatctcctgcatttgggaccattgttctgtctcaactctaacttgctccactattcttcttacaatagtcttgcaatgtc |
29561954 |
T |
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| Q |
310 |
ctgaacacaggtt |
322 |
Q |
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||||||||||||| |
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| T |
29561955 |
ctgaacacaggtt |
29561967 |
T |
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