View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6945_low_6 (Length: 317)
Name: NF6945_low_6
Description: NF6945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6945_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 313
Target Start/End: Complemental strand, 35278511 - 35278218
Alignment:
| Q |
24 |
gtgggaacagcggaaaggtgaataatcaatgcgagaaatattccaattcaatctttttattgtctgcataatg----tatttatctttatattgtggttt |
119 |
Q |
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||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
35278511 |
gtgggaacagcgggaaggtgaataatcaatgcgataaattttccaattccatctttttatggtctgcataattaacatatttatctttatattgtggttt |
35278412 |
T |
|
| Q |
120 |
atacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatcttagatgttagatttcaaccaggatcga |
219 |
Q |
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|||||||||||||||||| |||||||||||| || |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35278411 |
atacagcctttcatttgcaacatggatacttctacttctgttactgcctcagagtcacattcatctaccatcttagatgttagatttcaaccaggatcca |
35278312 |
T |
|
| Q |
220 |
ctatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtgagtctctttcttttcatatccccttcttctcactc |
313 |
Q |
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| T |
35278311 |
ctatatttgcaacatcttctgctgataaaacaataaaattctgggatgctaaaacggtgagtctctttcttttcataccccattctactcactc |
35278218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 84 - 313
Target Start/End: Complemental strand, 35241656 - 35241427
Alignment:
| Q |
84 |
tgtctgcataatgtatttatctttatattgtggtttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcat |
183 |
Q |
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||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||| || ||| || ||||||||| ||| |||||||||||| |
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| T |
35241656 |
tgtctgcgtaatgtatttatctttatattatggtttaaacagcctttcatttgttacatcgacactggcgattgtgttactacgtcaaagtcacattcat |
35241557 |
T |
|
| Q |
184 |
ctaccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtgagtct |
283 |
Q |
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| T |
35241556 |
ctaccatcttagaagttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcaaaaaaagtgagtct |
35241457 |
T |
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| Q |
284 |
ctttcttttcatatccccttcttctcactc |
313 |
Q |
| |
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|||||||||||||||||||||| ||||||| |
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| T |
35241456 |
ctttcttttcatatccccttctactcactc |
35241427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 95 - 290
Target Start/End: Complemental strand, 35283934 - 35283739
Alignment:
| Q |
95 |
tgtatttatctttatattgtggtttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatctta |
194 |
Q |
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||||||||| ||||||||||||| ||| |||||||||||||| || |||| | | || |||||||||||| |||||||||||||| ||||||||||| |
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| T |
35283934 |
tgtatttatggttatattgtggttaatatagcctttcatttgcaacgtggaaagtcttgattctgttactacgtcagagtcacattcgtctaccatcttt |
35283835 |
T |
|
| Q |
195 |
gatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtgagtctctttctt |
290 |
Q |
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|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35283834 |
gacgtgagatttcaaccaggatcaactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcaaaaaaagtgagtctctttctt |
35283739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 106 - 313
Target Start/End: Complemental strand, 35253865 - 35253658
Alignment:
| Q |
106 |
ttatattgtggtttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatcttagatgttagatt |
205 |
Q |
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||||||||||||||||| ||||||||||||||||| |||| ||| | ||||||||| | | |||||||||| | ||||||||| || |||||||| |
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| T |
35253865 |
ttatattgtggtttatatagcctttcatttgctacctggaaactggtctttctgttacggcattggagtcacatttagataccatcttcgaagttagatt |
35253766 |
T |
|
| Q |
206 |
tcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtgagtctctttcttttcatatccccttct |
305 |
Q |
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|||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
35253765 |
tcaaccaggatcaactgtgtttgcaacctcttctgctgataaaacagtaaaattatgggatgcaaacagtgtgagtctctttcttttcacatctccttct |
35253666 |
T |
|
| Q |
306 |
tctcactc |
313 |
Q |
| |
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||||||| |
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| T |
35253665 |
actcactc |
35253658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 173 - 292
Target Start/End: Complemental strand, 35287400 - 35287281
Alignment:
| Q |
173 |
gtcacattcatctaccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnn |
272 |
Q |
| |
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|||||||| |||||| ||||| |||||||||||| ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35287400 |
gtcacatttatctactatcttcgatgttagatttaaaccaggttcaactatatttgcaacatcctctgctgataaaacagtaaaattatgggatgcaaaa |
35287301 |
T |
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| Q |
273 |
nnngtgagtctctttctttt |
292 |
Q |
| |
|
||||||||||||||||| |
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| T |
35287300 |
aaagtgagtctctttctttt |
35287281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 35271760 - 35271590
Alignment:
| Q |
93 |
aatgtatttatctttatattgtggtttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatct |
192 |
Q |
| |
|
|||||| | ||| ||||||||||||||| | |||||||||||||||||||||| ||| || |||| |||| || |||||| |||||| | | |||||| |
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| T |
35271760 |
aatgtactgatccttatattgtggtttaaatagcctttcatttgctacatggaaactggtaattcttttacaacatcagagacacatttagatgccatct |
35271661 |
T |
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| Q |
193 |
tagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgg |
263 |
Q |
| |
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|||| || ||||||| | ||||||| ||||||||||||| ||||||||||||| |||||||||| ||||| |
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| T |
35271660 |
tagaagtcagatttcgatcaggatcacctatatttgcaacttcttctgctgatagaacagtaaaactatgg |
35271590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 35247258 - 35247083
Alignment:
| Q |
93 |
aatgtatttatctttatattgtggtttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatct |
192 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||| |||| | | | |||||||||| | | ||||||| ||| | || ||||| |
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| T |
35247258 |
aatgtatttatccatatattgtggtttatatagcctttcatttgctacgtggaaagtcgtgcttctgttactgcattagagtcagatttagatatcatct |
35247159 |
T |
|
| Q |
193 |
tagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgc |
268 |
Q |
| |
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|||| ||||||||||||||| ||| |||| |||||||||| ||||| |||| |||||||||| |||||||||| |
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| T |
35247158 |
tagaagttagatttcaaccaaaatcaactagatttgcaacaacttctcgtgatggaacagtaaaactatgggatgc |
35247083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 266
Target Start/End: Complemental strand, 35238528 - 35238385
Alignment:
| Q |
123 |
cagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatcttagatgttagatttcaaccaggatcgacta |
222 |
Q |
| |
|
|||||||| || |||||||||||||| | | || | ||||||| ||| ||||||||||| || | |||| ||| |||||||||||||||||| | | || |
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|
| T |
35238528 |
cagcctttaatatgctacatggatacctgtgattgtattactacatcacagtcacattcagctcctatctcagaagttagatttcaaccaggaacaaata |
35238429 |
T |
|
| Q |
223 |
tatttgcaacatcttctgctgataaaacagtaaaattatgggat |
266 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
35238428 |
tatttgcaacttcttcctctgataaagcagtaaaattatgggat |
35238385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 35275728 - 35275605
Alignment:
| Q |
117 |
tttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatcttagatgttagatttcaaccaggat |
216 |
Q |
| |
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|||||| |||||||||||||||||||||| | | || |||||||||| | ||||| ||||||| | |||||||||| ||||||||||||||| || |
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| T |
35275728 |
tttatatagcctttcatttgctacatggaaattggtaattctgttacttcaatagagtaacattcagatgccatcttagaatttagatttcaaccagcat |
35275629 |
T |
|
| Q |
217 |
cgactatatttgcaacatcttctg |
240 |
Q |
| |
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| ||||||||||||| ||||||| |
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|
| T |
35275628 |
cacctatatttgcaacttcttctg |
35275605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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