View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6945_low_8 (Length: 313)
Name: NF6945_low_8
Description: NF6945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6945_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 307
Target Start/End: Complemental strand, 49546589 - 49546287
Alignment:
| Q |
5 |
gctatattattctagaataaacatgagttgtggtcctatgatccaccaatactgcccattgaagcttcttgctgttttaccagtcgtgttaactttgtcc |
104 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49546589 |
gctatatctttctagaataaacatgagttgtggtcctatcatccaccaatactgcccattgaagcttcttgctgttttaccagtcgtgttaactttgtcc |
49546490 |
T |
|
| Q |
105 |
atttgttctcaactcacaagtgttttccttcttcatagtatacaggtttgattattaattgtataaaatttgttcaatgaaaataaacaaaaaatctaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49546489 |
atttgttctcaactcacaagtgttttccttcttcatagtatacaggtttgattattaattgtataaaatttgttcaatgaaaataaacaaaaaatctaaa |
49546390 |
T |
|
| Q |
205 |
agggatgtattaggtcagagagggtggcatgaccccgccgcatcttttgtccttggtcaagttattttgaaattatggtgtctttacattggcattagaa |
304 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49546389 |
agggatatattaggtcagagagggtggcatgaccccgccgcatcttttgtccttggtcaagttattttgaaattatggtgtctttacattggcattagaa |
49546290 |
T |
|
| Q |
305 |
atg |
307 |
Q |
| |
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||| |
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| T |
49546289 |
atg |
49546287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 47872680 - 47872947
Alignment:
| Q |
14 |
ttctagaataaacatgagttgtggtcctatgatccaccaatactgcccattgaagcttcttgctgttttaccagtc-gtgttaactttgtccatttgttc |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||| |||||||| |||| ||||||||||||| | |||||| |
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| T |
47872680 |
ttctagaataaacatgagttgtggtcctatcatccaccaatatggccctttgaagctccttgttgttttacaagtcaatgttaactttgtcta-ttgttc |
47872778 |
T |
|
| Q |
113 |
tcaactcacaagtgttttccttcttcatagtatacaggtttgattattaattgtataaaatttgttcaatgaaaataaacaaaaaatctaaaagggatgt |
212 |
Q |
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| T |
47872779 |
tcatctcacacg----ttccttcttcatagtatacatgtttgattattaattgcatgaaatat-ttcaatgaaaataaacaaaaaatctaaaaggagtgt |
47872873 |
T |
|
| Q |
213 |
attaggtcagagag-ggtggcatgaccccgccgcatcttttgtccttggtcaagttattttgaaattatggtgtcttt |
289 |
Q |
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|||| | ||||| | |||||| ||| ||||||| ||||||||||||| | ||||||||||| || ||||||||| |
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| T |
47872874 |
attaagggcgagagagatggcat-acc---ccgcatcctttgtccttggtcgacttattttgaaactacggtgtcttt |
47872947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 49443653 - 49443524
Alignment:
| Q |
14 |
ttctagaataaacatgagttgtg--gtcctatgatccaccaatactgcccattgaagcttcttgctgttttaccagtcgtgttaactttgtccatttgtt |
111 |
Q |
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|
|||||||||||||||||||||| ||||||| ||||| ||||| ||||| | ||||||||||| ||||| |||||| | ||||||||||||||||||| |
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| T |
49443653 |
ttctagaataaacatgagttgtatagtcctatcatccatcaatattgcccttcgaagcttcttgttgtttg-ccagtcatcttaactttgtccatttgtt |
49443555 |
T |
|
| Q |
112 |
ctcaactcacaagtgttttccttcttcatag |
142 |
Q |
| |
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|||| || ||||||| | ||||||||||||| |
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| T |
49443554 |
ctcatcttacaagtgatctccttcttcatag |
49443524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 47988536 - 47988495
Alignment:
| Q |
14 |
ttctagaataaacatgagttgtggtcctatgatccaccaata |
55 |
Q |
| |
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|||||| |||||||||||||||| |||||| ||||||||||| |
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|
| T |
47988536 |
ttctaggataaacatgagttgtgatcctatcatccaccaata |
47988495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 49443436 - 49443379
Alignment:
| Q |
159 |
ttaattgtataaaatttgttcaatgaaaataaacaaaaaatctaaaagggatgtatta |
216 |
Q |
| |
|
||||||| || |||||| | ||| ||||||||||||||||||| ||||| |||||||| |
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|
| T |
49443436 |
ttaattgcatgaaatttttccaaagaaaataaacaaaaaatctgaaaggaatgtatta |
49443379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 47988329 - 47988293
Alignment:
| Q |
170 |
aaatttgttcaatgaaaataaacaaaaaatctaaaag |
206 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||| |
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| T |
47988329 |
aaattttttcaaagaaaataaacaaaaaatctaaaag |
47988293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 14962087 - 14962229
Alignment:
| Q |
14 |
ttctagaataaacatgagttgtggtcctatgatccaccaatactgcccattgaagcttcttgctgttttaccagtcgtgttaactttgtccatttgttct |
113 |
Q |
| |
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|||| |||||||| ||| ||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||| || ||||||||||||||||| |||| |
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| T |
14962087 |
ttctggaataaacttgacctgtggtcctatcatccaccaatattgccctttgaagcttcttgttgttttaccactcatgttaactttgtccattatttct |
14962186 |
T |
|
| Q |
114 |
caactcacaagtgttttccttcttcatagtatacaggtttgat |
156 |
Q |
| |
|
|| |||| ||||||||||||||||| |||| ||| ||||||| |
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| T |
14962187 |
catctcattagtgttttccttcttcacagtacacaagtttgat |
14962229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 43157594 - 43157465
Alignment:
| Q |
17 |
tagaataaacatgagttgtggtcctatgatccaccaatactgcccattgaagcttcttgctgttttaccagtcgtgttaactttgtccatttgttctcaa |
116 |
Q |
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||||||||||||||| |||| |||||| | ||||||||| ||||| ||||||||||||| || ||| ||| ||||||||||||| ||||||||||| |
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| T |
43157594 |
tagaataaacatgaggtgtgttcctatcaaccaccaatattgccctttgaagcttcttgttgaaatacatgtcatgttaactttgtcaatttgttctcat |
43157495 |
T |
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| Q |
117 |
ctcacaagtgttttccttcttcatagtata |
146 |
Q |
| |
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|| | ||||||||| ||||||| ||||||| |
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| T |
43157494 |
cttataagtgtttttcttcttcgtagtata |
43157465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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