View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6946_high_12 (Length: 241)

Name: NF6946_high_12
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6946_high_12
NF6946_high_12
[»] chr7 (6 HSPs)
chr7 (14-226)||(41742229-41742441)
chr7 (8-104)||(46777306-46777402)
chr7 (11-91)||(24519345-24519425)
chr7 (13-77)||(41467531-41467595)
chr7 (20-77)||(2397862-2397919)
chr7 (14-55)||(36016477-36016518)
[»] chr4 (7 HSPs)
chr4 (9-90)||(34360901-34360982)
chr4 (8-77)||(55291300-55291369)
chr4 (8-121)||(24355737-24355850)
chr4 (8-90)||(27598213-27598296)
chr4 (13-77)||(46405490-46405554)
chr4 (8-90)||(34650817-34650900)
chr4 (17-71)||(34933469-34933523)
[»] chr8 (6 HSPs)
chr8 (8-104)||(32286063-32286159)
chr8 (8-77)||(45197143-45197212)
chr8 (9-90)||(7643696-7643776)
chr8 (9-90)||(32404604-32404685)
chr8 (8-57)||(34935132-34935181)
chr8 (14-59)||(40737695-40737740)
[»] chr2 (6 HSPs)
chr2 (8-90)||(34353292-34353374)
chr2 (8-77)||(37357295-37357364)
chr2 (14-77)||(15507042-15507105)
chr2 (5-77)||(15354376-15354453)
chr2 (5-77)||(6621468-6621540)
chr2 (5-73)||(38204669-38204737)
[»] chr5 (2 HSPs)
chr5 (8-77)||(38353639-38353708)
chr5 (9-76)||(9992548-9992615)
[»] chr6 (4 HSPs)
chr6 (17-103)||(8484653-8484739)
chr6 (22-90)||(8030808-8030876)
chr6 (8-104)||(10324460-10324558)
chr6 (7-67)||(32164064-32164124)
[»] chr3 (8 HSPs)
chr3 (8-90)||(26141684-26141766)
chr3 (14-77)||(22938495-22938558)
chr3 (22-90)||(22938358-22938426)
chr3 (9-94)||(3383591-3383679)
chr3 (8-77)||(49366289-49366358)
chr3 (27-73)||(51227441-51227487)
chr3 (4-73)||(50384634-50384703)
chr3 (33-73)||(31786191-31786231)
[»] chr1 (3 HSPs)
chr1 (8-90)||(3430593-3430675)
chr1 (5-77)||(42795405-42795477)
chr1 (9-62)||(4655712-4655765)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 41742441 - 41742229
Alignment:
Q  14 aacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaatcatgcccctaaggaaactggat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  41742441 aacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatagattccttaaccatgcccctaagggaactggat 41742342  T
Q  114 agcatgactctaaattataacaactcaatttctatgtgttgtcttgattcggattccataagtatatataatttacatgtttggtttataaatctaaaat 213  Q
    |||||||  |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41742341 agcatgatcctaaattataacaactcaatttctatgtgtcgtcttgattcggattctataagtatatataatttacatgtttggtttataaatctaaaat 41742242  T
Q  214 atatcgatataat 226  Q
    |||||||||||||    
T  41742241 atatcgatataat 41742229  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 46777306 - 46777402
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaatcatgcccctaagg 104  Q
    ||||| |||||||||||||||||||||||||   ||||||||||||||||||||  |||||||||| ||| ||| |||||||| |||  ||||||||    
T  46777306 cattggaacttgtgcattcaacttctcaaaagcataaaaagtgatattttcaacataaaactttctctttttggtttccttaaccattgccctaagg 46777402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 24519345 - 24519425
Alignment:
Q  11 tgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaat 91  Q
    ||||| ||||||| |||||||||||||||||||||||||| |||||| |||| |||| ||||||||| ||| || ||||||    
T  24519345 tgaaatttgtgcaatcaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttctttttttggttttcttaat 24519425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 41467595 - 41467531
Alignment:
Q  13 aaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||||| |||| |||||||||    
T  41467595 aaacttgtgcattcaacttctcaaaagtctaaaaaatggtattttcaacttaaaattttcttttt 41467531  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 2397919 - 2397862
Alignment:
Q  20 tgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    ||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||    
T  2397919 tgcattcaacttctcaaaagtctaaaaagtggtattttgaacttaaaactttcttttt 2397862  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 36016477 - 36016518
Alignment:
Q  14 aacttgtgcattcaacttctcaaaaatctaaaaagtgatatt 55  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  36016477 aacttgtgcattcaacttctcaaaagtataaaaagtgatatt 36016518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 34360901 - 34360982
Alignment:
Q  9 attgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaa 90  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| | | ||||||||    
T  34360901 attgaaacttgtgcattcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttcttttttttgtttccttaa 34360982  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 55291300 - 55291369
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    |||||||||||||||||| |||||||||||||| |||||| |||||||||||||  ||||||||||||||    
T  55291300 cattgaaacttgtgcattaaacttctcaaaaatataaaaaatgatattttcaacctaaaactttcttttt 55291369  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 24355850 - 24355737
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaatcatgcccctaaggaaa 107  Q
    ||||| ||||||||||||||||| ||||||| |||||||| |  ||||||||||| |||||||||| ||| ||| |||||||| |||  ||||||||  |    
T  24355850 cattggaacttgtgcattcaactcctcaaaagtctaaaaaattgtattttcaacttaaaactttctctttttggtttccttaaccattgccctaagggca 24355751  T
Q  108 ctggatagcatgac 121  Q
    |||  |||||||||    
T  24355750 ctgattagcatgac 24355737  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 27598296 - 27598213
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaag-tgatattttcaactaaaaactttctttttatggattccttaa 90  Q
    ||||| ||||||||||||||||||||||||| ||||||||| || ||||||||| | |||||||||||||| ||  ||||||||    
T  27598296 cattggaacttgtgcattcaacttctcaaaagtctaaaaagttggtattttcaagttaaaactttctttttttgatttccttaa 27598213  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 46405554 - 46405490
Alignment:
Q  13 aaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    ||||||||||||||| ||| |||||| | ||||||||||||||||||||  |||| |||||||||    
T  46405554 aaacttgtgcattcagcttttcaaaagtataaaaagtgatattttcaacctaaaattttcttttt 46405490  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 34650900 - 34650817
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtga-tattttcaactaaaaactttctttttatggattccttaa 90  Q
    ||||| || |||||||||||||| ||||||| | |||||| ||| ||||||||||| |||||||| ||||| | | ||||||||    
T  34650900 cattggaatttgtgcattcaactcctcaaaagtttaaaaaatgagtattttcaacttaaaacttttttttttttgtttccttaa 34650817  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 34933523 - 34933469
Alignment:
Q  17 ttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaacttt 71  Q
    ||||||| |||||| ||||||||||||||||||  |||||| |||| ||||||||    
T  34933523 ttgtgcaatcaactcctcaaaaatctaaaaagtattatttttaacttaaaacttt 34933469  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 32286063 - 32286159
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaatcatgcccctaagg 104  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||||||||||||  |||||||||||||| ||| ||| |||| |||  ||||||||    
T  32286063 cattggaacttgtgcattcaacttctcaaaagtataaaaagtgatattttcaacctaaaactttctttttttggtttctttaaccattgccctaagg 32286159  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 45197212 - 45197143
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    |||||||||||||||||||||||| |||||| | |||||| | |||||||||||| ||||||||||||||    
T  45197212 cattgaaacttgtgcattcaacttttcaaaagtttaaaaattaatattttcaacttaaaactttcttttt 45197143  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 7643776 - 7643696
Alignment:
Q  9 attgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaa 90  Q
    |||||||||||||||||||||| ||||||| | ||||| ||||| ||||||||  |||||||||||||| ||| || |||||    
T  7643776 attgaaacttgtgcattcaactcctcaaaagtttaaaaggtgat-ttttcaacataaaactttctttttttggtttacttaa 7643696  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 32404685 - 32404604
Alignment:
Q  9 attgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaa 90  Q
    ||||||| ||||||| |||||| ||||||| | |||||| || ||||||||||| ||||||||||| || ||| ||||||||    
T  32404685 attgaaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaactttcttattttggcttccttaa 32404604  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 34935181 - 34935132
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatatttt 57  Q
    ||||| |||||||||||||||||  |||||||| ||||||||||||||||    
T  34935181 cattggaacttgtgcattcaactcttcaaaaatttaaaaagtgatatttt 34935132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 40737740 - 40737695
Alignment:
Q  14 aacttgtgcattcaacttctcaaaaatctaaaaagtgatattttca 59  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||    
T  40737740 aactagtgcattcaacttctcaaaagtataaaaagtgatattttca 40737695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 34353292 - 34353374
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaa 90  Q
    ||||||||||||||||||||||| ||||||| | ||||||||| ||||||||||| |||| ||||||||| ||| ||||||||    
T  34353292 cattgaaacttgtgcattcaactcctcaaaagtttaaaaagtggtattttcaacttaaaattttctttttttggtttccttaa 34353374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 37357295 - 37357364
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||   |||| |||||||||    
T  37357295 cattgaaacttgtgcattcaacttctcaaaagtataaaaagtgatattttcaatctaaaattttcttttt 37357364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 15507105 - 15507042
Alignment:
Q  14 aacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    |||||||||||| |||| || |||||||||||||||| |||||| |||| ||||||||||||||    
T  15507105 aacttgtgcatttaactccttaaaaatctaaaaagtggtattttaaacttaaaactttcttttt 15507042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 15354453 - 15354376
Alignment:
Q  5 ttacattgaaacttgtgcattcaacttctcaaaaatct-----aaaaagtgatattttcaactaaaaactttcttttt 77  Q
    |||||||| ||||||||||||||||||||||||| | |     ||||| |||||||||||||  ||||||||||||||    
T  15354453 ttacattggaacttgtgcattcaacttctcaaaagtataaaaaaaaaaatgatattttcaacctaaaactttcttttt 15354376  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 6621540 - 6621468
Alignment:
Q  5 ttacattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    ||||||||||||||||||||||||  ||| |||||| |||| ||||| ||||| ||   ||||||||||||||    
T  6621540 ttacattgaaacttgtgcattcaaagtcttaaaaatataaagagtgacatttttaatataaaactttcttttt 6621468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 38204669 - 38204737
Alignment:
Q  5 ttacattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttct 73  Q
    ||||||||||||||||||||||||  ||| |||| | |||||||||| ||||| || | ||||||||||    
T  38204669 ttacattgaaacttgtgcattcaaaatcttaaaagtataaaaagtgacatttttaattcaaaactttct 38204737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 38353708 - 38353639
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  38353708 cattggaacttgtgcattcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttcttttt 38353639  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 9992615 - 9992548
Alignment:
Q  9 attgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttt 76  Q
    |||| ||||||||||| |||||  |||||| | ||||||||| ||||||||||| |||||||| ||||    
T  9992615 attggaacttgtgcatccaactcttcaaaagtttaaaaagtggtattttcaacttaaaactttttttt 9992548  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 8484739 - 8484653
Alignment:
Q  17 ttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaatcatgcccctaag 103  Q
    |||||||||||||||||||||| | |||||||||||||| |||||  |||||||||||||| ||| |||||||| |||  |||||||    
T  8484739 ttgtgcattcaacttctcaaaagtataaaaagtgatattctcaacctaaaactttctttttttggtttccttaaccattgccctaag 8484653  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 8030876 - 8030808
Alignment:
Q  22 cattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaa 90  Q
    ||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||| ||| || |||||    
T  8030876 cattcaacttctcaaaagtttaaaaagtgctattttcaacttaaaactttctttttttggttttcttaa 8030808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 10324460 - 10324558
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaag--tgatattttcaactaaaaactttctttttatggattccttaatcatgcccctaagg 104  Q
    ||||| ||||||| ||||||||| ||||||| ||||||||   |  ||||||||||| |||||||||||||| ||| |||||||| |||  ||||||||    
T  10324460 cattggaacttgtacattcaactcctcaaaagtctaaaaaaaatagtattttcaacttaaaactttctttttttggtttccttaaccattgccctaagg 10324558  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 32164124 - 32164064
Alignment:
Q  7 acattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaa 67  Q
    |||||| ||||||| || |||| |  |||||||| ||||||||||||||||||||| ||||    
T  32164124 acattggaacttgtacagtcaattcttcaaaaatttaaaaagtgatattttcaacttaaaa 32164064  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 26141766 - 26141684
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaa 90  Q
    ||||| ||||||||||||||||| |||||||||||||||| || |||||||||||  ||||||||||||| ||  ||||||||    
T  26141766 cattggaacttgtgcattcaactcctcaaaaatctaaaaaatggtattttcaactttaaactttctttttttgatttccttaa 26141684  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 22938558 - 22938495
Alignment:
Q  14 aacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    ||||||| ||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||    
T  22938558 aacttgtacattcaacttctcaaaagtctaaaaggtggtattttcaacttaaaactttcttttt 22938495  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 22938426 - 22938358
Alignment:
Q  22 cattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaa 90  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||| || |||| ||||    
T  22938426 cattcaacttctcaaaagtctaaaaggtggtattttcaacttaaaactttctttttctgaattctttaa 22938358  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 3383591 - 3383679
Alignment:
Q  9 attgaaacttgtgcattcaacttctcaaaaatctaaaaagtgat---attttcaactaaaaactttctttttatggattccttaatcat 94  Q
    |||| ||||||||||||||||| ||||||| ||||||| || ||   |||||||||||||| ||||||||||  || ||||||||||||    
T  3383591 attggaacttgtgcattcaactcctcaaaagtctaaaatgtaattgtattttcaactaaaagctttcttttttaggtttccttaatcat 3383679  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 49366289 - 49366358
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    |||||||| ||||||||||||||  | ||||||||||||| || ||||||||| | ||||||||||||||    
T  49366289 cattgaaatttgtgcattcaactctttaaaaatctaaaaaatggtattttcaatttaaaactttcttttt 49366358  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 51227441 - 51227487
Alignment:
Q  27 aacttctcaaaaatctaaaaagtgatattttcaactaaaaactttct 73  Q
    |||| ||||||||||||||||||| |||||| |||| ||||||||||    
T  51227441 aactcctcaaaaatctaaaaagtgttatttttaacttaaaactttct 51227487  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 50384703 - 50384634
Alignment:
Q  4 attacattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttct 73  Q
    ||||||||| |||||||||||||||  ||| |||| | |||||||||| ||||| || | ||||||||||    
T  50384703 attacattggaacttgtgcattcaaggtcttaaaagtataaaaagtgacatttttaatttaaaactttct 50384634  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 31786231 - 31786191
Alignment:
Q  33 tcaaaaatctaaaaagtgatattttcaactaaaaactttct 73  Q
    ||||||||||||||| | |||||||||||| ||||||||||    
T  31786231 tcaaaaatctaaaaaataatattttcaacttaaaactttct 31786191  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 3430593 - 3430675
Alignment:
Q  8 cattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttctttttatggattccttaa 90  Q
    ||||| ||||||||||||||||||||||||| | |||||||||||||||| |||  |||||||||||||| ||  ||||||||    
T  3430593 cattggaacttgtgcattcaacttctcaaaagtataaaaagtgatatttttaacctaaaactttctttttttgatttccttaa 3430675  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 42795405 - 42795477
Alignment:
Q  5 ttacattgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaactaaaaactttcttttt 77  Q
    |||||||||||||||| |||||||||| | |||| | |||||| |||| ||||||||| |||| |||||||||    
T  42795405 ttacattgaaacttgtacattcaactttttaaaagtataaaaaatgattttttcaacttaaaattttcttttt 42795477  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 4655712 - 4655765
Alignment:
Q  9 attgaaacttgtgcattcaacttctcaaaaatctaaaaagtgatattttcaact 62  Q
    ||||||| |||||||||||||| || |||| | |||||||||||||||||||||    
T  4655712 attgaaatttgtgcattcaactccttaaaagtttaaaaagtgatattttcaact 4655765  T

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