View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6946_high_2 (Length: 608)
Name: NF6946_high_2
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 96 - 590
Target Start/End: Original strand, 38391053 - 38391549
Alignment:
| Q |
96 |
taccagttagaaaaatctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagata |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38391053 |
taccagttagaaaaatctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagata |
38391152 |
T |
|
| Q |
196 |
atatatactcatgaagcacaattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagtaactactaataatt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38391153 |
atatatactcatgaagcacaattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagtaactactaataatt |
38391252 |
T |
|
| Q |
296 |
catacaaatccattactcatgtgtgccagcctactgtctcagattgcgtaatgaccatcattgccataaccgttttcccccgagctgtaatgcactgtga |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38391253 |
catacaaatccattactcatgtgtgccagcctactgtctcagattgcgtaatgaccatcattgccataaccgttttcccccgagctgtaatgcactgtga |
38391352 |
T |
|
| Q |
396 |
ttcagtgactgatgggagaatttatgtcggtgcattgttcttacggatatggcaattatgttaaatggaattgttgagattcccatgacatttggtggtc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38391353 |
ttcagtgactgatgggagaatttatgtcggtgcattgttcttacggatatggcaattatgttaaatggaattgttgagattcccatgacatttggtggtc |
38391452 |
T |
|
| Q |
496 |
ttcccgttttttacaagcaaagggaagactcctagctatcatgggaatctcagcggac---tgggagaatttatgtcaatgcattgttgtttacgaac |
590 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38391453 |
ttcccgttttttacaagcaaagggaatact-ctagctatcatgggaatttcagcagactgatgggagaatttatgtcaatgcattgttgtttacgaac |
38391549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 185 - 318
Target Start/End: Complemental strand, 38389931 - 38389798
Alignment:
| Q |
185 |
gtatcaagataatatatactcatgaagcacaattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagtaac |
284 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
38389931 |
gtatcaagagaatacatactcatgaagcgcaattcattttactatatcttctaactttgtcatgtaggtctgaacaatgtggtttttcaatttaagtaac |
38389832 |
T |
|
| Q |
285 |
tactaataattcatacaaatccattactcatgtg |
318 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |
|
|
| T |
38389831 |
tactaataattcataaaaatccattgctcatgtg |
38389798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 241
Target Start/End: Complemental strand, 39623982 - 39623809
Alignment:
| Q |
67 |
gttgggataacccttgctaataaacttgctac-cagttagaaaaatctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtggg |
165 |
Q |
| |
|
||||||| || |||||||||| |||||||||| || || || || |||||| |||| |||||||| ||| |||| |||||||||||||||||||||| || |
|
|
| T |
39623982 |
gttgggaaaagccttgctaatgaacttgctactcaatttgacaagtctaaaagccatccagctgctttgacaacaaacaagtatggaattggaaagttgg |
39623883 |
T |
|
| Q |
166 |
aatcgttcaaaccatgtgtgtatcaagataatatatactcatgaagcacaattcattttactatatcttcaaactt |
241 |
Q |
| |
|
||| |||||| | || || |||||| | ||| |||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
39623882 |
aattattcaaagcttgcttg--tcaagagactatttactcatgaagcgcaattcatctcactatatcttcaaactt |
39623809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 39591189 - 39591048
Alignment:
| Q |
111 |
tctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagataatatatactcatgaa |
210 |
Q |
| |
|
|||||| | |||||||| || ||| ||||||||||||||||||||||||| ||||||| |||||| | || |||||||| |||| |||||||||| |
|
|
| T |
39591189 |
tctaaaagtcacccagcagctttgacaaccaacaagtatggaattggaaactgggaattattcaaagc--ttgcttatcaagagaatacttactcatgaa |
39591092 |
T |
|
| Q |
211 |
gcacaattcattttactatatcttcaaactttgtcatgtaggtt |
254 |
Q |
| |
|
| |||||| |||| ||||||||||||||||| || ||||||| |
|
|
| T |
39591091 |
acgcaattcgtttttatatatcttcaaactttgccaggtaggtt |
39591048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38391012 - 38391051
Alignment:
| Q |
1 |
gaaaatgaaaaaccttataggattctaacgcctagacagt |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38391012 |
gaaaatgaaaaaccttataggattctaacgcctagacagt |
38391051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 38389660 - 38389776
Alignment:
| Q |
1 |
gaaaatgaaaaaccttataggattctaacgcctagacagtatgcagaggcatttcagctgaccgaagttgggataacccttgctaataaacttgctacc- |
99 |
Q |
| |
|
|||||||||||| |||||||| | | || |||| | ||| ||||||||||||| |||| || || ||||| |||| | |||||||| || |||||||| |
|
|
| T |
38389660 |
gaaaatgaaaaatcttataggtatgtgacacctaaagagtttgcagaggcattttagcttactgatgttggaataagctttgctaatgaatttgctacct |
38389759 |
T |
|
| Q |
100 |
agttagaaaaatctaaa |
116 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38389760 |
agttagaaaaatctaaa |
38389776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 39577024 - 39576914
Alignment:
| Q |
67 |
gttgggataacccttgctaataaacttgctac-cagttagaaaaatctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtggg |
165 |
Q |
| |
|
||||||| || ||||| |||| |||||| ||| || || || || |||||| |||| |||||||| ||| | ||||||||||||||||||||||| ||| |
|
|
| T |
39577024 |
gttgggagaagccttggtaatgaacttgttactcaatttgacaagtctaaaagccatccagctgctttgacgaccaacaagtatggaattggaaaacggg |
39576925 |
T |
|
| Q |
166 |
aatcgttcaaa |
176 |
Q |
| |
|
||| ||||||| |
|
|
| T |
39576924 |
aattgttcaaa |
39576914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 465
Target Start/End: Original strand, 38391507 - 38391571
Alignment:
| Q |
402 |
gactgatgggagaatttatgtcggtgcattgttctt-acggatatggcaattatgttaaatggaa |
465 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || ||| | |||||||||||||| ||||||| |
|
|
| T |
38391507 |
gactgatgggagaatttatgtcaatgcattgttgtttacgaacatggcaattatgttgaatggaa |
38391571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 39541091 - 39540974
Alignment:
| Q |
118 |
gccacccagctgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagataatatatactcatgaagcacaat |
217 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||| ||||||| |||||| || ||| | ||| |||||||| ||||| |||| ||||||| ||| |
|
|
| T |
39541091 |
gccacccagctgccttgacaaccaagaaatatggagttggaaaatgggaactttttaaagc--ttgtttatcaagagaatatttacttatgaagcgcaac |
39540994 |
T |
|
| Q |
218 |
tcattttactatatcttcaa |
237 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
39540993 |
tcatttgtctatatcttcaa |
39540974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 38390101 - 38389958
Alignment:
| Q |
3 |
aaatgaaaaaccttataggattctaacgcctagacagtatgcagaggca-tttcagctgaccgaagttgggataacccttgctaataaacttgctacc-- |
99 |
Q |
| |
|
||||||||||||||||| | || | || |||||| ||| ||| || ||| ||||| || || || |||||||||| |||| || ||||||||||||| |
|
|
| T |
38390101 |
aaatgaaaaaccttatatgtttttgacacctagagagtttgc-gatgcaatttcaactcactgatgttgggataagccttcctgttaaacttgctaccta |
38390003 |
T |
|
| Q |
100 |
---agttagaaaaatctaaacgccacccagctgccttggcaaccaa |
142 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38390002 |
gctagtaagaaaaatctaaaa-ccacccagctgccttggcaaccaa |
38389958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University