View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6946_high_4 (Length: 484)

Name: NF6946_high_4
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6946_high_4
NF6946_high_4
[»] chr1 (4 HSPs)
chr1 (21-462)||(33052650-33053112)
chr1 (54-359)||(13391066-13391396)
chr1 (410-468)||(33053148-33053206)
chr1 (71-171)||(13378632-13378740)
[»] chr5 (2 HSPs)
chr5 (23-468)||(29636454-29636920)
chr5 (314-366)||(12955580-12955632)
[»] scaffold0049 (1 HSPs)
scaffold0049 (21-468)||(46115-46569)
[»] chr4 (3 HSPs)
chr4 (23-369)||(19141112-19141479)
chr4 (340-468)||(41501001-41501130)
chr4 (314-366)||(34295310-34295362)
[»] chr3 (1 HSPs)
chr3 (23-369)||(677638-678005)
[»] chr8 (2 HSPs)
chr8 (310-395)||(3694242-3694328)
chr8 (396-458)||(3694476-3694538)
[»] chr7 (2 HSPs)
chr7 (310-395)||(39051415-39051501)
chr7 (396-458)||(39051649-39051711)
[»] chr6 (1 HSPs)
chr6 (314-366)||(3761299-3761350)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 21 - 462
Target Start/End: Original strand, 33052650 - 33053112
Alignment:
Q  21 tataaagagataacaacataaacagaatgtggtgtctttttcgatactatactctaaccaattaccaaattcattaaaccaagagggaca---------- 110  Q
    |||||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||              
T  33052650 tataaagagataacaacataaacaaagtgtagtgtcttttttgatactatactctaaccaattaccaaattcattaaaccaagagggacaaaatcttctc 33052749  T
Q  111 -ttgaatttccaatttttctttgaggaaaattatgttgattaggttggcatggtcctctttgtagatat-------atatcttcac---atcatttggat 199  Q
     |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||       ||||  || |   |||||||||||    
T  33052750 attgaatttccaatttttctttgaggaaa-ttatgttgattaggttggcatggtcctccttgtagatatgctcggcatattatctcttgatcatttggat 33052848  T
Q  200 ggtatgttgacattttaggctgctttctcggatccgatgttaactcttccaaattacatgaaacatgttgagaactagatccctgctcatgggatggtaa 299  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33052849 ggtatgttgacattttaggccgctttcccggatccgatggtaactctttcaaattacatgaaacatgttgagaactagatccttgctcatgggatggtaa 33052948  T
Q  300 ttttctttttaaaaaattctccataactcctacaataaccaacacaataacaaactttaagattcaatgactat-aaataaaaaacaacattctttcaca 398  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  33052949 ttttcttttaaaaaaattctccataactcctgcaatcaccaacacaataacaaactttaagattcaatgagtatgaaataaaaaacaacattctttcaca 33053048  T
Q  399 ttttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgtcaca 462  Q
    |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33053049 ttttcatctagtgctactactcctttcttaccatccatcctcattagagtaaaacaatgtcaca 33053112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 54 - 359
Target Start/End: Complemental strand, 13391396 - 13391066
Alignment:
Q  54 gtctttttcgatactatactctaaccaattaccaaattcattaaaccaagagggaca-----------ttgaatttccaatttttctttgaggaaaatta 142  Q
    ||||||||| ||| | |||||||||| |||||||||||||||||| |||||||||||           |||||||||||||||||||||||||||||||     
T  13391396 gtctttttcaatattgtactctaaccgattaccaaattcattaaatcaagagggacaaaatcctctcattgaatttccaatttttctttgaggaaaattg 13391297  T
Q  143 tgttgattaggttggcatggtcctctttgtagatatat----------atcttcacatcatttggatggtatgttgacattttaggctgctttctcggat 232  Q
    |||| | |||||||||||||||||||| | | |||| |          ||||    |||||| ||||| |||||| || |||||||| |||||   ||||    
T  13391296 tgtttaataggttggcatggtcctcttggcaaatatgttttgtgtattatctcttgatcattaggatgatatgtttacgttttaggc-gcttttcaggat 13391198  T
Q  233 ccgatgttaactcttccaaattacatgaaacat------gttgagaactagatccctgctcatgggatggtaattttctttttaaaaaattctccataac 326  Q
    | |||| | |||||| ||||||||||| |||||      |||||||||||||||| |||||||| ||| |||||||||| || |||||||||||||| ||    
T  13391197 ctgatggttactctttcaaattacatggaacatattgttgttgagaactagatccttgctcatgcgattgtaattttctctt-aaaaaattctccattac 13391099  T
Q  327 tcctacaataaccaacacaataacaaactttaa 359  Q
    |||||||| |||| ||||||||| |||||||||    
T  13391098 tcctacaacaacccacacaataaaaaactttaa 13391066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 410 - 468
Target Start/End: Original strand, 33053148 - 33053206
Alignment:
Q  410 tgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaag 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33053148 tgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaag 33053206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 13378740 - 13378632
Alignment:
Q  71 actctaaccaattaccaaattcattaaaccaagagggac--------attgaatttccaatttttctttgaggaaaattatgttgattaggttggcatgg 162  Q
    ||||||||| ||||||| |||||||||||||||||||||        ||||||||||||||||||||||||| ||| || |||| | ||||| ||||  |    
T  13378740 actctaaccgattaccatattcattaaaccaagagggacacaatcttattgaatttccaatttttctttgagtaaacttgtgttaaataggtgggcacag 13378641  T
Q  163 tcctctttg 171  Q
    |||||||||    
T  13378640 tcctctttg 13378632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 23 - 468
Target Start/End: Complemental strand, 29636920 - 29636454
Alignment:
Q  23 taaagagataacaacataaacagaatgtggtgtctttttcgatactatactctaaccaattaccaaattcattaaaccaagagggaca-----------t 111  Q
    |||| ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |    
T  29636920 taaatagataacaacacaaacagaatgcggcgtctttttcgatactatactctaaccaattaccaaattcattaaaccaagagggacaaaatcttctcat 29636821  T
Q  112 tgaatttccaatttttctttgaggaaaattatgttgattaggttggcatggtcctctttgtagatata----------tatcttcacatcatttggatgg 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||           |||||    |||||||||||||    
T  29636820 tgaatttccaatctttctttgaggaaaattatgttgattaggttggcatggtcctttttgtagatatgctcgacgtattatctcttgatcatttggatgg 29636721  T
Q  202 tatgttgacattttaggctgctttctcggatccgatgttaactcttccaaattacatgaaacatgttgagaactagatccctgctcatgggatggtaatt 301  Q
    |||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |  |     
T  29636720 tatgttgacattttaggccgctttcccggatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatgatcttg 29636621  T
Q  302 ttctttttaaaaaattctccataactcctacaataaccaacacaataacaaactttaagattcaatgactat-aaataaaaaacaacattctttcacatt 400  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  29636620 atctttttaaaaaattctccataa-tcctacaataaccaacacaataacaaactttaagattcaatgagtatgaaataaaaaacaacattctttcacatt 29636522  T
Q  401 ttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaag 468  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29636521 ttcatctagtgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaag 29636454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 12955632 - 12955580
Alignment:
Q  314 aattctccataactcctacaataaccaacacaataacaaactttaagattcaa 366  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12955632 aattctccataactcctacaacaaccaacacaataacaaactttaagattcaa 12955580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 468
Target Start/End: Complemental strand, 46569 - 46115
Alignment:
Q  21 tataaagagataacaacataaacagaatgtggtgtctttttcgatactatactctaaccaattaccaaattcattaaaccaagagggaca---------- 110  Q
    |||||| | ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||              
T  46569 tataaacaaataacaacataaacagaatgtgacgtctttt-cgatactatactctaaccaattagcaaattcattaaaccaagagggacaaaatcttctc 46471  T
Q  111 -ttgaa-tttccaatttttctttgaggaaaattatgttgattaggttggcatggtcctctttgtagatata----------tatcttcacatcatttgga 198  Q
     ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||           |||||    ||||||||||    
T  46470 attgaaatttccaatttttctttgaggaaaattattttgattaggttggcatggtcctctctgtggatattctcggcgtactatctcttgatcatttgga 46371  T
Q  199 tggtatgttgacattttaggctgctttctcggatccgatgttaactcttccaaattacatgaaacatgttgagaactagatccctgctcatgggatggta 298  Q
    || |||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||   |||||||||||||||| ||||| ||||||||||    
T  46370 tgctatgttgacattttaggccgctttcccggatccgatggtaactcttccaaattacatgaaa---gttgagaactagatccttgctcgtgggatggta 46274  T
Q  299 attttctttttaaaaaattctccataactcctacaataaccaacacaataacaaactttaagattcaatgactat-aaataaaaaacaacattctttcac 397  Q
    ||||||||||||||||||||||||||||||||||||            ||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||    
T  46273 attttctttttaaaaaattctccataactcctacaa------------taacaaactctaagattcaatgagtatgaaataaaaaacaacattatttcac 46186  T
Q  398 attttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgtcacacagaag 468  Q
    ||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  46185 attttcatctagtgctactactcctttcttacaatccatccctattagagtaaaacaatgtcacacagaag 46115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 23 - 369
Target Start/End: Complemental strand, 19141479 - 19141112
Alignment:
Q  23 taaagagataacaacataaacagaatgtggtgtctttttcgatactatactctaaccaattaccaaattcattaaaccaagagggaca-----------t 111  Q
    |||| ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |    
T  19141479 taaatagataacaacacaaacagaatgcggcgtctttttcgatactatactctaaccaattaccaaattcattaaaccaagagggacaaaatcttctcat 19141380  T
Q  112 tgaatttccaatttttctttgaggaaaattatgttgattaggttggcatggtcctctttgtagatata----------tatcttcacatcatttggatgg 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||           |||||    |||||||||||||    
T  19141379 tgaatttccaatctttctttgaggaaaattatgttgattaggttggcatggtcctttttgtagatatgctcggcgtattatctcttgatcatttggatgg 19141280  T
Q  202 tatgttgacattttaggctgctttctcggatccgatgttaactcttccaaattacatgaaacatgttgagaactagatccctgctcatgggatggtaatt 301  Q
    |||||||||||||||||| |||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||  |     
T  19141279 tatgttgacattttaggccgctttcccggatctgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttg 19141180  T
Q  302 ttctttttaaaaaattctccataactcctacaataaccaacacaataacaaactttaagattcaatga 369  Q
     ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19141179 atctttttaaaaaattctgcataactcctacaacaaccaacacaataacaaactttaagattcaatga 19141112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 340 - 468
Target Start/End: Original strand, 41501001 - 41501130
Alignment:
Q  340 aacacaataacaaactttaagattcaatgactat-aaataaaaaacaacattctttcacattttcacctaatgctactactcctttcttaccatccatcc 438  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  41501001 aacacaataacaaactttaagattcaatgagtatgaaataaaaaacaacattctttcacattttcatctagtgctaccactcctttcttaccatccatcc 41501100  T
Q  439 ccattagagtaaaacaatgtcacacagaag 468  Q
    ||||||||||||||||||||||||||||||    
T  41501101 ccattagagtaaaacaatgtcacacagaag 41501130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 34295362 - 34295310
Alignment:
Q  314 aattctccataactcctacaataaccaacacaataacaaactttaagattcaa 366  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34295362 aattctccataactcctacaacaaccaacacaataacaaactttaagattcaa 34295310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 23 - 369
Target Start/End: Original strand, 677638 - 678005
Alignment:
Q  23 taaagagataacaacataaacagaatgtggtgtctttttcgatactatactctaaccaattaccaaattcattaaaccaagagggaca-----------t 111  Q
    |||| ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |    
T  677638 taaatagataacaacacaaacagaatgcggcgtctttttcgatactatactctaaccaattaccaaattcattaaaccaagagggacaaaatcttctcat 677737  T
Q  112 tgaatttccaatttttctttgaggaaaattatgttgattaggttggcatggtcctctttgtagatata----------tatcttcacatcatttggatgg 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||           |||||    |||||||||||||    
T  677738 tgaatttccaatctttctttgaggaaaattatgttgattaggttggcatggtccattttgtagatatgctcggcgtattatctcttgatcatttggatgg 677837  T
Q  202 tatgttgacattttaggctgctttctcggatccgatgttaactcttccaaattacatgaaacatgttgagaactagatccctgctcatgggatggtaatt 301  Q
    |||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||  |     
T  677838 tatgttgacattttaggccgctttcccggatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttg 677937  T
Q  302 ttctttttaaaaaattctccataactcctacaataaccaacacaataacaaactttaagattcaatga 369  Q
     ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  677938 atctttttaaaaaattctgcataactcctacaacaaccaacacaataacaaactttaagattcaatga 678005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 3694242 - 3694328
Alignment:
Q  310 aaaaaattctccataactcctacaataaccaacacaataacaaactttaagattcaatgactat-aaataaaaaacaacattctttc 395  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  3694242 aaaaaattctccataactcctacaacaaccaacacaataacaaactttaagattcaatgagtatgaaataaaaaacaacattctttc 3694328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 396 - 458
Target Start/End: Original strand, 3694476 - 3694538
Alignment:
Q  396 acattttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgt 458  Q
    ||||||||||||| |||||||||| ||||||||| || |||||||||||||||||||||||||    
T  3694476 acattttcacctagtgctactacttctttcttactatacatccccattagagtaaaacaatgt 3694538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 39051415 - 39051501
Alignment:
Q  310 aaaaaattctccataactcctacaataaccaacacaataacaaactttaagattcaatgactat-aaataaaaaacaacattctttc 395  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||    
T  39051415 aaaaaattctccataactcctacaacaaccaacacaataacaaactgtaagattcaatgagtgtgaaataaaaaacaacattctttc 39051501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 396 - 458
Target Start/End: Original strand, 39051649 - 39051711
Alignment:
Q  396 acattttcacctaatgctactactcctttcttaccatccatccccattagagtaaaacaatgt 458  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  39051649 acattttcacctagtgctactactcctttcttactatccatccccattagagtaaaaaaatgt 39051711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 3761299 - 3761350
Alignment:
Q  314 aattctccataactcctacaataaccaacacaataacaaactttaagattcaa 366  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  3761299 aattctccataactcctacaacaac-aacacaataacaaactttaagattcaa 3761350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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