View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_high_6 (Length: 294)
Name: NF6946_high_6
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 8401562 - 8401304
Alignment:
| Q |
16 |
atcacaattgaatcaagaattgttaagttagatcaagaaaaaataaatacaaatcttagaaaagtttgctagcaaattcatcaactgtagttccctcaac |
115 |
Q |
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| T |
8401562 |
atcacaattgaatcaagaattgttaagttagatcaagaaaaaaaaactaaaga-cttagaaaagtttgctagcaaattcatcaactgtagttccctcaac |
8401464 |
T |
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| Q |
116 |
acgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8401463 |
acgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaataaatctccattttctctt |
8401364 |
T |
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| Q |
216 |
tgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaat |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401363 |
tgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaat |
8401304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 8367848 - 8368106
Alignment:
| Q |
16 |
atcacaattgaatcaa-gaattgttaagttagatcaagaaaaaataaatacaaatcttagaaaagtttgctagcaaattcatcaactgtagttccctcaa |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| || || | | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8367848 |
atcacaattgaatcaaagaattgttaagttagatcaagaaaaaa-aactaaaga-cttagaaaagtttgctagcaaattcatcaactgtagttccctcaa |
8367945 |
T |
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| Q |
115 |
cacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctct |
214 |
Q |
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| T |
8367946 |
cacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaacaaatctccattttctct |
8368045 |
T |
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| Q |
215 |
ttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368046 |
ttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaat |
8368106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 8423144 - 8422881
Alignment:
| Q |
16 |
atcacaattgaatcaa-gaattgttaagttagatcaagaaaaaa-taaatacaaatc--ttagaaaagtttgctagcaaattcatcaactgtagttccct |
111 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| |||| ||| | ||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
8423144 |
atcataattgaatcaaagaattgttaagttagatcaagaaaaaagtaaactaaaaacaattagaaaagcttgcttgcaaattcatcaactatagttccct |
8423045 |
T |
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| Q |
112 |
caacacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttc |
211 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8423044 |
caacacgagagtaagctgattttatagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaacaaatctccattttc |
8422945 |
T |
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| Q |
212 |
tctttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaat |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422944 |
tctttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaat |
8422881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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