View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_high_9 (Length: 265)
Name: NF6946_high_9
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_high_9 |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: scaffold1157 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 751 - 490
Alignment:
| Q |
1 |
ccaaatcaatatgtcacaattacatcaaaaactaatatcaaactt---gagtgagaaaataaaagataa---tgaatacacttaccactactcggttttg |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||| |||||||||||||||||||||||| |
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| T |
751 |
ccaaatcaatatgtcacaattacatcaaaaactaatatcaaactttgtgagtgaacagataaaagataacaatgactacacttaccactactcggttttg |
652 |
T |
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| Q |
95 |
tattaggaataaacctgtttgaatcgtctcctaagcaagtccataaaagttattacaatcagttaaatttgtaatataacgaacgtttctatcgattaat |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
651 |
tattaggaataaacctgtttgaatcgtctcctaagcaactccataaaagttattacaatcagttaaatttgtaatacaacgaacgtttctatcgattaat |
552 |
T |
|
| Q |
195 |
taaaatgaattttggttaagtgaatccatttaaagaaatgaacttacagacataatattctt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
551 |
taaaatgaattttggttaagtgaatccatttaaagaaatgaacttacagacataatattctt |
490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 16568384 - 16568645
Alignment:
| Q |
1 |
ccaaatcaatatgtcacaattacatcaaaaactaatatcaaactt---gagtgagaaaataaaagataa---tgaatacacttaccactactcggttttg |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||| |||||||||||||||||||||||| |
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| T |
16568384 |
ccaaatcaatatgtcacaattacatcaaaaactaatatcaaactttgtgagtgaacagataaaagataacaatgactacacttaccactactcggttttg |
16568483 |
T |
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| Q |
95 |
tattaggaataaacctgtttgaatcgtctcctaagcaagtccataaaagttattacaatcagttaaatttgtaatataacgaacgtttctatcgattaat |
194 |
Q |
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| T |
16568484 |
tattaggaataaacctgtttgaatcgtctcctaagcaactccataaaagttattacaatcagttaaatttgtaatacaacgaacgtttctatcgattaat |
16568583 |
T |
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| Q |
195 |
taaaatgaattttggttaagtgaatccatttaaagaaatgaacttacagacataatattctt |
256 |
Q |
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| T |
16568584 |
taaaatgaattttggttaagtgaatccatttaaagaaatgaacttacagacataatattctt |
16568645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 16526794 - 16527053
Alignment:
| Q |
1 |
ccaaatcaatatgtcacaattacatcaaaaactaatatcaaactt---gagtgagaaaataaaagataa---tgaatacacttaccactactcggttttg |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||| |||||||||||||||||||||||| |
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| T |
16526794 |
ccaaatcaatatgtcacaattacatcaaaaactaatatcaaactttgtgagtgaacagataaaagataacaatgactacacttaccactactcggttttg |
16526893 |
T |
|
| Q |
95 |
tattaggaataaacctgtttgaatcgtctcctaagcaagtccataaaagttattacaatcagttaaatttgtaatataacgaacgtttctatcgattaat |
194 |
Q |
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| T |
16526894 |
tattaggaataaacctgttgtaatcgtgacctaagtaagtccataaaaacaat-acaatcagttaaatttgtaatacaaagaaccttt-tctcgattagt |
16526991 |
T |
|
| Q |
195 |
taaaatgaattttggttaagtgaatccatttaaagaaatgaacttacagacataatattctt |
256 |
Q |
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| T |
16526992 |
taaaatgaattttgcttaattgaatccatttaaagagatgaacttacagacataatattctt |
16527053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 16587177 - 16587333
Alignment:
| Q |
69 |
aatacacttaccactactcggttttgtattaggaataaacctgtttgaatcgtctcctaagcaagtccataaaagttattacaatcagttaaatttgtaa |
168 |
Q |
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|||| ||| ||||||||||||||||||| |||||||| || ||| ||||||| |||||| ||||| ||| || |||||| ||| |||||| ||| |
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| T |
16587177 |
aatatactaaccactactcggttttgtacaaggaataatccggttgtaatcgtcacctaag----tccatgaaaaataatacaatgagtcaaatttttaa |
16587272 |
T |
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| Q |
169 |
tataacgaacgtttctatcgattaattaaaatgaattttggttaagtgaatccatttaaaga |
230 |
Q |
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| T |
16587273 |
taaaaagagccttt-tatcaattaattaaactgaattttggttaattgaatccatttaaaga |
16587333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 16518367 - 16518421
Alignment:
| Q |
59 |
aaagataatgaatacacttaccactactcggttttgtattaggaataaacctgtt |
113 |
Q |
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| T |
16518367 |
aaagataatgaatacacttaccactgctcggttctgtataaggaataaacctgtt |
16518421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16518254 - 16518326
Alignment:
| Q |
1 |
ccaaatcaatatgtcacaattacatcaaaaactaatatcaaacttgagtgagaaaataaaagataatgaataca |
74 |
Q |
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| T |
16518254 |
ccaaatcaatatgccacaaatccatcaaaaactaataccaaactt-tgtgataaaacaaaagataatgaataca |
16518326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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