View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_low_10 (Length: 278)
Name: NF6946_low_10
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 41743675 - 41743948
Alignment:
| Q |
2 |
agtaccacaagaaatataaacatgttgagggttgactgtatcaccctatttctgacgataaattattaaataagaaagaatatatttaataaaaagtttg |
101 |
Q |
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| T |
41743675 |
agtaccacaagaaatataaacacgttgagggttgactgtatcaccctatttctgacgataaattattaaataagaaagaatatatttaataaaaagtatg |
41743774 |
T |
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| Q |
102 |
ttataaactcaacattttatcacttaataacgtaaatttttaaattatactttagcagtgcaactctatccatatgcagatggacttcatcttaaaacat |
201 |
Q |
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| T |
41743775 |
ttataaactcaacattttatcacttaataacgtaaatttttaaattatactttagcagtgcgactctatccatatgcagatggacttcatcttaagacat |
41743874 |
T |
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| Q |
202 |
atatgaacgtggtaccacacatattgtcatcatatattgttgatagagatgtgttattggacttacatttgtct |
275 |
Q |
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| T |
41743875 |
atatgaacgtggtatcacacatatcgtcatcatatattgttgatagagatgtgttactggacttacatttgtct |
41743948 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 24621979 - 24622074
Alignment:
| Q |
173 |
atatgcagatggacttcatcttaaaacatatatgaacgtggtaccacacatattgtcatcatatattgttgatagagatgtgttattggacttaca |
268 |
Q |
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||||||| || |||| |||| || ||||||||||| || ||||||||| ||| ||||||||| ||||||| |||||| ||||| |||| ||||| |
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| T |
24621979 |
atatgcatattgactccatcctatgacatatatgaatgtagtaccacacctatcgtcatcataaattgttgtcagagatatgttactggatttaca |
24622074 |
T |
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