View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_low_14 (Length: 251)
Name: NF6946_low_14
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 29145816 - 29145573
Alignment:
| Q |
8 |
ccaagaaaatcaacaacattaaaatctcatatttgaattccaatccgtaaatgcgtgacatatttattgaccgttcgatcttaaattgaacagtgaaaga |
107 |
Q |
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| T |
29145816 |
ccaataaaatcaacaacattaaaatctcatatttgaattccaatccgtaaatgcgtgacatatttattgaccgttcgatcttaaattgaacagtgaaaga |
29145717 |
T |
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| Q |
108 |
ttatttaaagatggtttcaaatcgatgatcgagatcaattagtgcgtttaaatacattttttaaatgtacataatcgagtccttaccttgcattttagag |
207 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145716 |
ttatttaaagatagttttaaatcgatgatcgagatcaattagtgcgtttaaatacattttttaaatgtacataatcgagtccttaccttgcattttagag |
29145617 |
T |
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| Q |
208 |
atgtgtttcctcagcttcccttcacaccctttgcaatgcaaaga |
251 |
Q |
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| T |
29145616 |
atgtgtttcctcagcttcccttcacaccctttgcaatgcaaaga |
29145573 |
T |
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