View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6946_low_15 (Length: 249)

Name: NF6946_low_15
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6946_low_15
NF6946_low_15
[»] chr4 (17 HSPs)
chr4 (35-249)||(25842966-25843180)
chr4 (62-202)||(9972736-9972880)
chr4 (55-204)||(26448592-26448745)
chr4 (55-161)||(54561223-54561333)
chr4 (55-176)||(51967266-51967391)
chr4 (55-204)||(56423964-56424117)
chr4 (62-155)||(6487314-6487411)
chr4 (62-201)||(8563354-8563497)
chr4 (127-204)||(3860249-3860326)
chr4 (127-204)||(3869006-3869083)
chr4 (127-204)||(25013407-25013484)
chr4 (72-204)||(21486476-21486612)
chr4 (55-113)||(21306294-21306352)
chr4 (60-110)||(40317591-40317641)
chr4 (60-110)||(40327665-40327715)
chr4 (55-92)||(41470324-41470361)
chr4 (55-127)||(22479861-22479933)
[»] chr2 (9 HSPs)
chr2 (55-204)||(19948499-19948652)
chr2 (55-176)||(13898465-13898590)
chr2 (55-176)||(14039082-14039207)
chr2 (55-173)||(3991765-3991887)
chr2 (62-204)||(38413448-38413594)
chr2 (55-185)||(33262833-33262967)
chr2 (62-155)||(41978847-41978944)
chr2 (55-108)||(43318748-43318801)
chr2 (62-111)||(45161127-45161176)
[»] scaffold0246 (1 HSPs)
scaffold0246 (62-204)||(1328-1474)
[»] chr6 (4 HSPs)
chr6 (55-201)||(8779567-8779717)
chr6 (55-204)||(31996234-31996387)
chr6 (55-155)||(21199564-21199668)
chr6 (55-92)||(7835359-7835396)
[»] chr5 (7 HSPs)
chr5 (62-204)||(33892836-33892982)
chr5 (64-204)||(2675070-2675214)
chr5 (62-147)||(21238753-21238842)
chr5 (55-111)||(16800786-16800842)
chr5 (55-201)||(34909556-34909706)
chr5 (54-98)||(29964172-29964216)
chr5 (54-98)||(30010582-30010626)
[»] chr3 (5 HSPs)
chr3 (55-205)||(9818551-9818705)
chr3 (62-111)||(37832630-37832679)
chr3 (55-111)||(29690689-29690745)
chr3 (55-111)||(47467398-47467454)
chr3 (55-111)||(49293861-49293917)
[»] chr1 (7 HSPs)
chr1 (62-204)||(7798482-7798628)
chr1 (55-155)||(33886846-33886950)
chr1 (55-155)||(33957300-33957404)
chr1 (55-147)||(34751558-34751654)
chr1 (55-205)||(34019100-34019254)
chr1 (61-113)||(46042036-46042088)
chr1 (72-108)||(9192106-9192142)
[»] chr7 (7 HSPs)
chr7 (62-205)||(35313517-35313664)
chr7 (55-204)||(14732281-14732434)
chr7 (55-111)||(19594268-19594324)
chr7 (55-127)||(34656647-34656719)
chr7 (62-154)||(21024077-21024173)
chr7 (58-161)||(6268505-6268612)
chr7 (62-111)||(38910539-38910588)
[»] scaffold0421 (1 HSPs)
scaffold0421 (55-111)||(1757-1813)
[»] scaffold0433 (1 HSPs)
scaffold0433 (127-204)||(351-428)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 25842966 - 25843180
Alignment:
Q  35 aaaggtaaactcgcaaaatatttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaatttacgagttaa 134  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| ||||| ||||||||| ||||||    
T  25842966 aaaggtaaactcgcaaactatttaccaagtttaacatatgttaactcggtcaatctcttcaaactttctgatttcaccataaaccgaatttacaagttaa 25843065  T
Q  135 catgtttttgccacgtaaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtgacattagcaatgattgatgtggaatgtttg 234  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25843066 catgtttttgccacgtaaaagtataaattcggacgagtttacaaattaatactcgatttgtgaaacactgacattagcaatgattgatgtggaatgtttg 25843165  T
Q  235 ataagtgtcaatccc 249  Q
    |||||||||||||||    
T  25843166 ataagtgtcaatccc 25843180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 9972880 - 9972736
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaaata 157  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||| ||| ||||||||||| |||||| |    
T  9972880 agtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagtttacacgtttttgccacctaaaaaca 9972781  T
Q  158 taaattcaaacgagtttacaaattaatattcgatttgtgaaacag 202  Q
    |||| || | ||| ||||| | |||||| |||||||||| |||||    
T  9972780 taaactcgagcgaatttacgagttaatactcgatttgtggaacag 9972736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 26448745 - 26448592
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaatttac----gagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||  |||||||||||||||||||  |||||||||| |||||||| | |||   | |||||    ||||| ||||||||||||||| |    
T  26448745 tttaccgagtttaacgcgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaattaagtttacctccgagtttacatgtttttgccacct 26448646  T
Q  151 aaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||||| |||| || | ||||||||| | |||| | |||||||||| |||||||    
T  26448645 aaaaatgtaaactcgagcgagtttacgagttaacactcgatttgtggaacagtg 26448592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 54561333 - 54561223
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| ||||||||||||||||||   |||||||||| |||||||| | ||| ||| ||||    |||||| ||||||||||||||| |    
T  54561333 tttaccgagtttaacacgtgttaactcggtcaaacacgtcaaactttccgatttcaccaaaaaccgagtttacctccgagtttacatgtttttgccacct 54561234  T
Q  151 aaaaatataaa 161  Q
    |||||| ||||    
T  54561233 aaaaatgtaaa 54561223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 51967391 - 51967266
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| | ||||||| |||||||||||||||||||  |||||||||  |||||||| | ||| ||| ||||    |||||||||| ||||||||||| |    
T  51967391 tttaccgaatttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacct 51967292  T
Q  151 aaaaatataaattcaaacgagtttac 176  Q
    |||||  |||| || |||||||||||    
T  51967291 aaaaacgtaaactcgaacgagtttac 51967266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 56423964 - 56424117
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaatttac----gagttaacatgtttttgccacgt 150  Q
    |||||| |||||||||  |||||||| |||||||||  |||||||||| |||||||||| ||| ||| |||||    ||||||||| ||||||||||| |    
T  56423964 tttaccgagtttaacacatgttaacttggtcaaactcatcaaactttccgatttcactaaaaaccgagtttacctccgagttaacacgtttttgccacct 56424063  T
Q  151 aaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||||  |||| ||   |||||||||   |||| ||||| |||||| |||||||    
T  56424064 aaaaacgtaaactcgggcgagtttacgtgttaacattcgctttgtggaacagtg 56424117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 6487314 - 6487411
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaaa 155  Q
    ||||||||| ||||| |||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||||||| ||||||||||| ||||||    
T  6487314 agtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccacctaaaaa 6487411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 201
Target Start/End: Original strand, 8563354 - 8563497
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaaata 157  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||||  | ||| ||| ||||    |||||||||| ||||||| ||  ||||||      
T  8563354 agtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaaccgagtttatctccgagttaacacgtttttgtcatctaaaaacg 8563453  T
Q  158 taaattcaaacgagtttacaaattaatattcgatttgtgaaaca 201  Q
    |||| ||   ||||||||||| |||| | |||||||||| ||||    
T  8563454 taaactcgtgcgagtttacaagttaacactcgatttgtggaaca 8563497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 3860249 - 3860326
Alignment:
Q  127 cgagttaacatgtttttgccacgtaaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||||||||| ||||||||||| ||||||  |||| || |||||||||||   |||| | ||||||||||||||||||    
T  3860249 cgagttaacacgtttttgccacataaaaacgtaaactcgaacgagtttacgtgttaacactcgatttgtgaaacagtg 3860326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 3869006 - 3869083
Alignment:
Q  127 cgagttaacatgtttttgccacgtaaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||||||||| ||||||||||| ||||||  |||| || |||||||||||   |||| | ||||||||||||||||||    
T  3869006 cgagttaacacgtttttgccacataaaaacgtaaactcgaacgagtttacgtgttaacactcgatttgtgaaacagtg 3869083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 25013484 - 25013407
Alignment:
Q  127 cgagttaacatgtttttgccacgtaaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||||||||||||||||||||| ||||||  |||| || |||||||||||   |||| | |||||||||| |||||||    
T  25013484 cgagttaacatgtttttgccacctaaaaacgtaaactcgaacgagtttacgtgttaacactcgatttgtggaacagtg 25013407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 21486612 - 21486476
Alignment:
Q  72 gtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaaatataaattcaaa 167  Q
    |||||| || |||||||||  ||||||||||||||||| | | ||| ||| ||||    |||||| ||| | ||||||||| ||||||  |||| || ||    
T  21486612 gtgttacctaggtcaaactcgtcaaactttctgatttctccaaaaaccgagtttaccttcgagtttacacggttttgccacctaaaaacgtaaactcgaa 21486513  T
Q  168 cgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    ||||||||| | |||| | |||||||||| |||||||    
T  21486512 cgagtttacgagttaacactcgatttgtggaacagtg 21486476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 21306294 - 21306352
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcacta 113  Q
    |||||| ||||||||| |||||||||||  |||| |  |||||||||||||||||||||    
T  21306294 tttaccgagtttaacacgtgttaactcgaccaaattcgtcaaactttctgatttcacta 21306352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 40317591 - 40317641
Alignment:
Q  60 caagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttca 110  Q
    ||||||||||||||||||||| | |||||||  |||||| |||||||||||    
T  40317591 caagtttaacatgtgttaactagatcaaactagtcaaacgttctgatttca 40317641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 40327665 - 40327715
Alignment:
Q  60 caagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttca 110  Q
    ||||||||||||||||||||| | |||||||  |||||| |||||||||||    
T  40327665 caagtttaacatgtgttaactagatcaaactagtcaaacgttctgatttca 40327715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 41470324 - 41470361
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttt 92  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  41470324 tttaccgagtttaacacgtgttaactcggtcaaacttt 41470361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 22479933 - 22479861
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaatttac 127  Q
    ||||||||||||| ||  |||||||||| |||||||| |||||| ||| |||||||  | ||||||| |||||    
T  22479933 tttaccaagtttaccacatgttaactcgctcaaacttgtcaaacattccgatttcaacaaaaaacgattttac 22479861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 19948652 - 19948499
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| |||||||||||||||||||  |||||||||| |||||||| | |||  || ||||    |||||||||| ||||||||||| |    
T  19948652 tttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaactgagtttacctccgagttaacacgtttttgccacct 19948553  T
Q  151 aaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||||| |||| ||   ||||||||||  |||| | ||||||||||||||||||    
T  19948552 aaaaatgtaaactcgggcgagtttacatgttaacactcgatttgtgaaacagtg 19948499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 13898590 - 13898465
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| |||||||||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||||||| ||||||||| | |    
T  13898590 tttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccgcct 13898491  T
Q  151 aaaaatataaattcaaacgagtttac 176  Q
    |||||  |||| ||| ||||||||||    
T  13898490 aaaaacgtaaactcagacgagtttac 13898465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 14039207 - 14039082
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| |||||||||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||||||| ||||||||| | |    
T  14039207 tttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccgcct 14039108  T
Q  151 aaaaatataaattcaaacgagtttac 176  Q
    |||||  |||| ||| ||||||||||    
T  14039107 aaaaacgtaaactcagacgagtttac 14039082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 3991887 - 3991765
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| |||||||||||||||||||  |||||||||  |||||||| | ||| ||| ||||    |||||||||| ||||||||||| |    
T  3991887 tttaccgagtttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacct 3991788  T
Q  151 aaaaatataaattcaaacgagtt 173  Q
    |||||  |||| || ||||||||    
T  3991787 aaaaacgtaaactcgaacgagtt 3991765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 38413448 - 38413594
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaaata 157  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||| ||| ||||||||||| ||||||      
T  38413448 agtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagtttacacgtttttgccacctaaaaacg 38413547  T
Q  158 taaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||| ||  |||||||||| | |||| | ||||||| || |||||||    
T  38413548 taaactcggacgagtttacgagttaacactcgatttatggaacagtg 38413594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 33262967 - 33262833
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaatttac----gagttaacatgtttttgccacgt 150  Q
    |||||| |||||| || |||||||||| ||||||||  |||||||||| |||||||| | ||| ||| |||||    ||||| ||| ||||||||||| |    
T  33262967 tttaccgagtttaccacgtgttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttaccttcgagtttacacgtttttgccacct 33262868  T
Q  151 aaaaatataaattcaaacgagtttacaaattaata 185  Q
    |||||  |||| || ||||||||||| | ||||||    
T  33262867 aaaaacgtaaactcgaacgagtttacgagttaata 33262833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 41978944 - 41978847
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaaa 155  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||||  | ||| ||| ||||    ||| |||||||||||||||||| ||||||    
T  41978944 agtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaaccgagtttacctccgaattaacatgtttttgccacctaaaaa 41978847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 43318748 - 43318801
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgattt 108  Q
    |||||| |||||||||  ||||||||||||||||||  |||||||||| |||||    
T  43318748 tttaccgagtttaacacatgttaactcggtcaaactcgtcaaactttccgattt 43318801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 45161127 - 45161176
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcac 111  Q
    ||||||||| |||||||||||||| ||||  |||||||||| ||||||||    
T  45161127 agtttaacacgtgttaactcggtcgaactcgtcaaactttccgatttcac 45161176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 1474 - 1328
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaatttacg----agttaacatgtttttgccacgtaaaaata 157  Q
    ||||||||| ||||||||||||| |||||  |||||||||| |||||||||| ||| ||| |||||     |||||||||||||||||||| ||||||      
T  1474 agtttaacacgtgttaactcggttaaactcgtcaaactttccgatttcactaaaaaccgagtttacctccaagttaacatgtttttgccacctaaaaacg 1375  T
Q  158 taaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||| ||   ||||||||| | |||| | ||||||||||||||||||    
T  1374 taaactcggtcgagtttacgagttaacactcgatttgtgaaacagtg 1328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 201
Target Start/End: Original strand, 8779567 - 8779717
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaatttac----gagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| | ||||||| |||||||||  |||||||||| |||||||| | ||| ||| |||||    ||||||||| ||||||||||| |    
T  8779567 tttaccgagtttaacacgagttaacttggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacct 8779666  T
Q  151 aaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaaca 201  Q
    |||||  |||| ||  |||||||||| | |||| | |||||||||||||||    
T  8779667 aaaaacgtaaactcggacgagtttacgagttaacactcgatttgtgaaaca 8779717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 31996234 - 31996387
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| |||||||||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||||||| ||||||||||| |    
T  31996234 tttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccacct 31996333  T
Q  151 aaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||||  |||| || | ||||||| |   |||| | ||||||||||| ||||||    
T  31996334 aaaaacgtaaactcgagcgagtttgcgtgttaacactcgatttgtgatacagtg 31996387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 21199668 - 21199564
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaatttac----gagttaacatgtttttgccacgt 150  Q
    |||||| |||||||||  ||||||||||||||||||  |||||||||| |||||||| | ||| ||| |||||    ||||||||| | ||||||||| |    
T  21199668 tttaccgagtttaacacatgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttaccttggagttaacacggttttgccacct 21199569  T
Q  151 aaaaa 155  Q
    |||||    
T  21199568 aaaaa 21199564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 7835359 - 7835396
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttt 92  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  7835359 tttaccgagtttaacacgtgttaactcggtcaaacttt 7835396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 33892836 - 33892982
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaaata 157  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||||  | ||| ||| ||||    |||||||||| ||||||||||| ||||||      
T  33892836 agtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaatcgagtttacctccgagttaacacgtttttgccacctaaaaacg 33892935  T
Q  158 taaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    ||||||| ||||| |||||   |||| | |||||||||| |||||||    
T  33892936 taaattcgaacgaatttacgtgttaacactcgatttgtgcaacagtg 33892982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 2675070 - 2675214
Alignment:
Q  64 tttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaaatata 159  Q
    ||||||| |||||||||||||||||||  |||||||||  |||||||| | ||| ||| ||||    |||||||||| ||||||||||| ||||||  ||    
T  2675070 tttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgta 2675169  T
Q  160 aattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    || ||   |||||||||  ||||| | ||||||||||||||||||    
T  2675170 aactcgggcgagtttacgtattaacactcgatttgtgaaacagtg 2675214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 21238753 - 21238842
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgcca 147  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||| || | ||| ||| ||||    |||||||||| ||||||||||    
T  21238753 agtttaacatgtgttaactcggtcaaactcgtcaaactttccgattttaccaaaaaccgagtttacctccgagttaacacgtttttgcca 21238842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 16800842 - 16800786
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcac 111  Q
    |||||| ||||||||||||||||| |||||||||||  |||||| |||| |||||||    
T  16800842 tttaccgagtttaacatgtgttaagtcggtcaaactcgtcaaacattctaatttcac 16800786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 34909706 - 34909556
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| | ||| |||||||||||||  |||||||||| |||||||| | | | ||| ||||    ||| |||||| ||||||||||| |    
T  34909706 tttaccgagtttaacacgcgttcactcggtcaaactcctcaaactttccgatttcaccaaagaccgagtttacctccgaattaacacgtttttgccacct 34909607  T
Q  151 aaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaaca 201  Q
    |||||  |||| || | |||||||||   |||| | |||||||||| ||||    
T  34909606 aaaaacgtaaactcgagcgagtttacgtgttaacactcgatttgtggaaca 34909556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 29964216 - 29964172
Alignment:
Q  54 atttaccaagtttaacatgtgttaactcggtcaaacttttcaaac 98  Q
    ||||||| | ||||||||||||||||| |||||||||| ||||||    
T  29964216 atttaccgaatttaacatgtgttaacttggtcaaacttgtcaaac 29964172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 30010582 - 30010626
Alignment:
Q  54 atttaccaagtttaacatgtgttaactcggtcaaacttttcaaac 98  Q
    ||||||| | ||||||||||||||||| |||||||||| ||||||    
T  30010582 atttaccgaatttaacatgtgttaacttggtcaaacttgtcaaac 30010626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 9818551 - 9818705
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| ||||| |||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||||||| ||||||||||| |    
T  9818551 tttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccacct 9818650  T
Q  151 aaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtga 205  Q
    |||||  |||| ||   |||||||||   |||| | |||||||||| ||||||||    
T  9818651 aaaaacgtaaactcgggcgagtttacgtgttaacactcgatttgtggaacagtga 9818705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 37832679 - 37832630
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcac 111  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  37832679 agtttaacacgtgttaactcggtcaaactcgtcaaactttctgatttcac 37832630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 29690745 - 29690689
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcac 111  Q
    |||||||||||||||| |||||||||||||||||||  ||| || ||||||||||||    
T  29690745 tttaccaagtttaacacgtgttaactcggtcaaactcgtcatacattctgatttcac 29690689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 47467398 - 47467454
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcac 111  Q
    |||||||||||||||| |||||||||||||||||||  ||||| |||  ||||||||    
T  47467398 tttaccaagtttaacacgtgttaactcggtcaaactcgtcaaaattttcgatttcac 47467454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 49293917 - 49293861
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcac 111  Q
    |||||| | ||||||| ||||||| |||||||||||  |||||||||| ||||||||    
T  49293917 tttaccgaatttaacacgtgttaattcggtcaaactcgtcaaactttccgatttcac 49293861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 7798628 - 7798482
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaaata 157  Q
    ||||||||| ||||| |||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||||||| ||||||||||| ||||||      
T  7798628 agtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacg 7798529  T
Q  158 taaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||| ||   |||||||||   |||||| |||||||||| |||||||    
T  7798528 taaactcgggcgagtttacgtgttaatactcgatttgtggaacagtg 7798482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 33886846 - 33886950
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| ||||| |||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||||||| ||||||||||| |    
T  33886846 tttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacct 33886945  T
Q  151 aaaaa 155  Q
    |||||    
T  33886946 aaaaa 33886950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 33957404 - 33957300
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| ||||| |||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||||||| ||||||||||| |    
T  33957404 tttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacct 33957305  T
Q  151 aaaaa 155  Q
    |||||    
T  33957304 aaaaa 33957300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 34751558 - 34751654
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgcca 147  Q
    |||||| ||||||||| ||||||||||||||||||||  ||||||||| |||||||| | ||| ||| ||||    |||||||||| ||||||||||    
T  34751558 tttaccgagtttaacacgtgttaactcggtcaaacttggcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgcca 34751654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 205
Target Start/End: Complemental strand, 34019254 - 34019100
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| | ||||||| |||||||||||||||| ||  |||||||||| |||||||| | ||| ||||||||    ||||||||||  |||||||||| |    
T  34019254 tttaccgaatttaacacgtgttaactcggtcaacctcgtcaaactttccgatttcaccaaaaatcgaatttacctccgagttaacacatttttgccacct 34019155  T
Q  151 aaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtga 205  Q
     ||||  |||| ||  |||||||||| | |||| | || |||||||||| |||||    
T  34019154 taaaacgtaaactcggacgagtttacgagttaacactcaatttgtgaaagagtga 34019100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 46042088 - 46042036
Alignment:
Q  61 aagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcacta 113  Q
    |||||||||| ||||||||||  |||||||| |||||| ||||||||||||||    
T  46042088 aagtttaacacgtgttaactcaatcaaacttatcaaacattctgatttcacta 46042036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 9192142 - 9192106
Alignment:
Q  72 gtgttaactcggtcaaacttttcaaactttctgattt 108  Q
    |||||||||||||||||||  ||||||||||||||||    
T  9192142 gtgttaactcggtcaaactcgtcaaactttctgattt 9192106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 35313664 - 35313517
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaaata 157  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||||| | ||| ||||||||    |||||||||| | ||||||||  ||||||      
T  35313664 agtttaacacgtgttaactcggtcaaactcatcaaactttccgatttcaccaaaaaccgaatttacctccgagttaacacggttttgccatctaaaaacg 35313565  T
Q  158 taaattcaaacgagtttacaaattaatattcgatttgtgaaacagtga 205  Q
    |||| ||   |||||||||   |||| | |||||||||| ||||||||    
T  35313564 taaactcgggcgagtttacgtgttaacactcgatttgtggaacagtga 35313517  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 14732281 - 14732434
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgt 150  Q
    |||||| ||||||||| ||||| |||||||||||||  |||||||||| |||||||| | ||| | | ||||    |||||||||| ||||||||||| |    
T  14732281 tttaccgagtttaacacgtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccaagtttacctccgagttaacacgtttttgccacct 14732380  T
Q  151 aaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||||  |||| |  | |||||||||   |||| | |||||||||| |||||||    
T  14732381 aaaaacgtaaacttgagcgagtttacgtgttaacactcgatttgtggaacagtg 14732434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 19594324 - 19594268
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcac 111  Q
    |||||| ||||||||| |||||||||||||||||||  |||||||||| ||||||||    
T  19594324 tttaccgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcac 19594268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 34656719 - 34656647
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaatttac 127  Q
    |||||| ||||||||| |||||||||||||||||||  |||||||||  |||||||| | ||| |||||||||    
T  34656719 tttaccgagtttaacacgtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgaatttac 34656647  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 21024173 - 21024077
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaaa 154  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||||| | ||| ||| ||||    |||||||||| ||||||| ||| |||||    
T  21024173 agtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttaccttcgagttaacacgtttttgtcacctaaaa 21024077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 6268612 - 6268505
Alignment:
Q  58 accaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcactataaaacgaattta----cgagttaacatgtttttgccacgtaaa 153  Q
    ||||| ||||||| |||||||||||||||||||  |||||| |||| ||||||| | ||| | | ||||    |||||||||| ||||||| ||| ||||    
T  6268612 accaaatttaacacgtgttaactcggtcaaactcgtcaaacattctaatttcaccaaaaacctagtttacatccgagttaacacgtttttgacacctaaa 6268513  T
Q  154 aatataaa 161  Q
     |||||||    
T  6268512 gatataaa 6268505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 38910588 - 38910539
Alignment:
Q  62 agtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcac 111  Q
    ||||||||| |||||||||||||||| ||  |||||||||| ||||||||    
T  38910588 agtttaacacgtgttaactcggtcaatctcgtcaaactttccgatttcac 38910539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 1813 - 1757
Alignment:
Q  55 tttaccaagtttaacatgtgttaactcggtcaaacttttcaaactttctgatttcac 111  Q
    |||| ||||||||||| |||||||||||||||||||  |||||||||| ||||||||    
T  1813 tttaacaagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcac 1757  T

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Target: scaffold0433 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 428 - 351
Alignment:
Q  127 cgagttaacatgtttttgccacgtaaaaatataaattcaaacgagtttacaaattaatattcgatttgtgaaacagtg 204  Q
    |||||||||| ||||||||||| ||||||  |||| || |||||||||||   |||| | ||||||||||||||||||    
T  428 cgagttaacacgtttttgccacataaaaacgtaaactcgaacgagtttacgtgttaacactcgatttgtgaaacagtg 351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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