View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6946_low_16 (Length: 248)

Name: NF6946_low_16
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6946_low_16
NF6946_low_16
[»] chr7 (2 HSPs)
chr7 (71-248)||(33490825-33491002)
chr7 (12-42)||(33490766-33490796)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 71 - 248
Target Start/End: Original strand, 33490825 - 33491002
Alignment:
Q  71 ggtacttgagaaacgctaaacatcacaaatatgaatgaaccaattacggtgctttatttgcaactcataaaaagtagagtattgatatattgtgatgttt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33490825 ggtacttgagaaacgctaaacatcacaaatatgaatgaaccaattacggagctttatttgcaactcataaaaagtagagtattgatatattgtgatgttt 33490924  T
Q  171 ttgtactcaaaactcttgtagattccttttatgtaatctttgtttgtttgaaactgtatcagcatgtaataatttctt 248  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  33490925 ttgtactcaaaactcttgtagattccttttatgtaatctttgctcgtttgaaactgtatcagcatgtaataatttctt 33491002  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 33490766 - 33490796
Alignment:
Q  12 tcatcaccattgttgtcttcgttgtccacac 42  Q
    |||||||||||||||||||||||||||||||    
T  33490766 tcatcaccattgttgtcttcgttgtccacac 33490796  T

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