View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_low_2 (Length: 350)
Name: NF6946_low_2
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 35201407 - 35201739
Alignment:
| Q |
1 |
tcatcctaatcacgctttacctctatgtccctttcttggatttcgaatgttcttttttatattccactgcacaattccaattccattattttatcaccca |
100 |
Q |
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| T |
35201407 |
tcatcctaatcacgctttacctctatgtccctttcttggatttcgaatgttcttttttatattccactgcacaattccaattccattattttatcaccca |
35201506 |
T |
|
| Q |
101 |
aattccatcttagaccaaacccatcacgtgaacctagctacacaattcaattaattaatctaccatatagtattatatcattcttaagtcttaggtcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35201507 |
aattccatcttagaccaaacccatcacgtgaacctagctacacaattcaattaattaatctaccatatagtattatatcattcttaagtcttaggtcatt |
35201606 |
T |
|
| Q |
201 |
taattaaataatattactaatactccaaaacatttgaaataaaatggtaaaagatctctttcaacttaactagatgtcttagtttaaattcggtcatgtg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35201607 |
taattaaataatattattaatactccaaaacatttgaaataaaatggtaaaagatctctttcaacttaactagatgtcttagttcgaattcggtcatgtg |
35201706 |
T |
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| Q |
301 |
aatgcaacagtaataacctaccaaaagagagtt |
333 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |
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| T |
35201707 |
aatgcaacagtaataacctatcaaaagagagtt |
35201739 |
T |
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