View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_low_20 (Length: 215)
Name: NF6946_low_20
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 14356845 - 14357010
Alignment:
| Q |
1 |
gatccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaataactcctacaccaacattgaacaacaacaacgacactact |
100 |
Q |
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| T |
14356845 |
gatccaccaaaatccttcctctttgaccatcaaacaaagaaaagaaaatttctcacaaatgactcgtacacctacattgaacaacaacaacgacactact |
14356944 |
T |
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| Q |
101 |
cttctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggtagtatg |
166 |
Q |
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| T |
14356945 |
cttctgtctctcttccattttgcttctaacacagatcttcctccaattcttcatcttggtagtatg |
14357010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 2 - 166
Target Start/End: Complemental strand, 29658172 - 29658008
Alignment:
| Q |
2 |
atccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaataactcctacaccaacattgaacaacaacaacgacactactc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||| |
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| T |
29658172 |
atccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaatgattcgtacaccaacattgaacaacaacaacgacattactc |
29658073 |
T |
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| Q |
102 |
ttctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggtagtatg |
166 |
Q |
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| T |
29658072 |
ttttgtctctcttccatttttcttttaacacagatctctctccaattcttcatcttggtagtatg |
29658008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 5548368 - 5548201
Alignment:
| Q |
2 |
atccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaataactcctacaccaacattgaacaacaacaacgacact---- |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||| |||||||||||||||||| |
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| T |
5548368 |
atccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaagttctcacaaatgatgcgtacaccaacattcaacaacaacaacgacactctgc |
5548269 |
T |
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| Q |
98 |
----actcttctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggta |
161 |
Q |
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| T |
5548268 |
atacactcttctgtctctcttccattttgcttccaacatagatctctctccaattcttcatcttggta |
5548201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 21730700 - 21730756
Alignment:
| Q |
107 |
tctctcttccattttgcttctaacatagatct-tc-ctccaattcttcatcttggta |
161 |
Q |
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||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |
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| T |
21730700 |
tctctcttccattttgcttctaacacagatctctctctccaattcttcatcttggta |
21730756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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