View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_low_21 (Length: 201)
Name: NF6946_low_21
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 50806532 - 50806699
Alignment:
| Q |
16 |
atgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagcac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50806532 |
atgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagcac |
50806631 |
T |
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| Q |
116 |
ttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagt |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50806632 |
ttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagt |
50806699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 50869345 - 50869178
Alignment:
| Q |
16 |
atgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagcac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50869345 |
atgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagcac |
50869246 |
T |
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| Q |
116 |
ttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagt |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50869245 |
ttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagt |
50869178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 48553857 - 48554024
Alignment:
| Q |
16 |
atgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagcac |
115 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
48553857 |
atgcataatgggaacaaaaggctatgctgctcctgagtatatcatgtcaggtattggcattttaccatataggttccatttggattaacaacttaagcac |
48553956 |
T |
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| Q |
116 |
ttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagt |
183 |
Q |
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|
||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||| |||| |
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| T |
48553957 |
ttatagcataagcgtttatgtataagctatttttatataaaataaagtcagattgttttcataaaagt |
48554024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 44196329 - 44196178
Alignment:
| Q |
16 |
atgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagcac |
115 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44196329 |
atgcataatgggaacaaaaggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaactt------ |
44196236 |
T |
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| Q |
116 |
ttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagt |
183 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
44196235 |
----------agcgcttatgtataagctgtttttatttaaaataaagtcaaatagttttcatataagt |
44196178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 182
Target Start/End: Original strand, 26599146 - 26599176
Alignment:
| Q |
152 |
ataaaataaagtcaaatagttttcatataag |
182 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
26599146 |
ataaaataaagtcaaatagttttcatataag |
26599176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 39362045 - 39362117
Alignment:
| Q |
108 |
ttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagt |
183 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| || || |||||||||| |||||||| ||||| |
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| T |
39362045 |
ttaagcacttatagcataagcacttatgtataagctattttcat---aataaaagtcaaattgttttcatgtaagt |
39362117 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 2732360 - 2732311
Alignment:
| Q |
131 |
ttatgtataagctgtttttatataaaataaagtcaaatagttttcatataag |
182 |
Q |
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||||||||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
2732360 |
ttatgtataagctatttttata--aaataaagtcaaattattttcatataag |
2732311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 33944571 - 33944603
Alignment:
| Q |
150 |
atataaaataaagtcaaatagttttcatataag |
182 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
33944571 |
atataaaataaagtcaaattgttttcatataag |
33944603 |
T |
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