View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_low_3 (Length: 303)
Name: NF6946_low_3
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 89 - 253
Target Start/End: Complemental strand, 42387553 - 42387389
Alignment:
| Q |
89 |
agaccagattattaataacttgtttactgatggaatatttgctgttgctatcatattctacatcttttgaatttcatttagtgctttctaatatatgcta |
188 |
Q |
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| T |
42387553 |
agaccagattattaataacttgtttactgatggaatatttgctgttgctatcatattctacatcttttgaatttcatttagtgctttctaatatatgcta |
42387454 |
T |
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| Q |
189 |
ttggaaattctttagaatattgttacctgttgatttgtgataggtctgcagattaatcaataaat |
253 |
Q |
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| T |
42387453 |
ttggaaattctttagaatattgttacctgttgatttgtgataggtctgcagattaatcaataaat |
42387389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 89 - 244
Target Start/End: Original strand, 3190603 - 3190758
Alignment:
| Q |
89 |
agaccagattattaataacttgtttactgatggaatatttgctgttgctatcatattctacatcttttgaatttcatttagtgctttctaatatatgcta |
188 |
Q |
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| T |
3190603 |
agaccagattattaataacttgtttactgatggaatatttgctgttgctatcatactctacatcttttgaatttcatttagtgctttctaatatatgcta |
3190702 |
T |
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| Q |
189 |
ttggaaattctttagaatattgttacctgttgatttgtgataggtctgcagattaa |
244 |
Q |
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| T |
3190703 |
ttggaaattctttagaatattgttacctgttgatttgggataggtctgcagattaa |
3190758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 1752838 - 1752801
Alignment:
| Q |
242 |
taatcaataaatcttacaaaagagaatattctctctct |
279 |
Q |
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| T |
1752838 |
taatcaataaatcttacaaaagagaatagtctctctct |
1752801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 43414221 - 43414261
Alignment:
| Q |
247 |
aataaatcttacaaaagagaatattctctctctttactgtt |
287 |
Q |
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| T |
43414221 |
aataactcttacaaaagaaaatagtctctctctttactgtt |
43414261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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