View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_low_4 (Length: 262)
Name: NF6946_low_4
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 34953309 - 34953066
Alignment:
| Q |
1 |
cggaaccacaaccaaaggtcttaaagcgagcatcaatgattttcccattctcatcaaccttgatttgaagcttcatgacatcaccacaagcgggtgcacc |
100 |
Q |
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| T |
34953309 |
cggaaccacaaccaaaggtcttaaagcgagcatcaatgattttcccattctcatcaaccttgatttgaagcttcatgacatcaccacaagcgggtgcacc |
34953210 |
T |
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| Q |
101 |
aacaagaccagttcccaccgttggatcattcttatcgaaggatccaacattccggggattgtcgtagtgatccaccaccctctcgtggtagaatcgtgga |
200 |
Q |
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| T |
34953209 |
aacaagaccagttcccaccgttggatcattcttatcgaaggatccaacattccggggattgtcgtagtgatccaccaccctctcgtggtagaatcgtgga |
34953110 |
T |
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| Q |
201 |
agaaccctaattgctggatttggcgtctcaaacgacgccgtttg |
244 |
Q |
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| T |
34953109 |
agaaccctaattgctggatttggcgtctcaaacgacgccgtttg |
34953066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 34957229 - 34956981
Alignment:
| Q |
2 |
ggaaccacaaccaaaggtcttaaagcgagcatcaatgattttcccattctcatcaaccttgatttgaagcttcatgacatcacc------acaagcgggt |
95 |
Q |
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| T |
34957229 |
ggaaccacatccaaaggtcttaaagcaagcttcaacgattttcccattctcaacgaccttaatatgaagcttcataacatcaccttcaccacaagcgggt |
34957130 |
T |
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| Q |
96 |
gcaccaacaagaccagttcccaccgttggatcattcttatcgaaggatccaacattccggggattgtcgtagtgatccaccaccctctcgtggtagaatc |
195 |
Q |
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| T |
34957129 |
gcaccaacaagaccaattcccacatccggattattcttatcgaaggatccaacattccggggtttttcgtagtgatccaccaccttcgggtggtagaatc |
34957030 |
T |
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| Q |
196 |
gtggaagaaccctaattgctggatttggcgtctcaaacgacgccgtttg |
244 |
Q |
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| T |
34957029 |
atggaagaaccctaactgctggattcggcgtctcaaacgacaccgtttg |
34956981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 34944515 - 34944414
Alignment:
| Q |
1 |
cggaaccacaaccaaaggtcttaaagcgagcatcaatgattttcccattctcatcaaccttgatttgaagcttcatgacatcaccacaagcgggtgcacc |
100 |
Q |
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|||||||||| |||||||||||||||| ||| |||| |||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| |
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| T |
34944515 |
cggaaccacatccaaaggtcttaaagcaagcttcaacgattttcccattctcatcgaccttaatctgaaggttcataacatcaccacaagcgggtgcacc |
34944416 |
T |
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| Q |
101 |
aa |
102 |
Q |
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|| |
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| T |
34944415 |
aa |
34944414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 34944417 - 34944328
Alignment:
| Q |
144 |
ccaacattccggggattgtcgtagtgatccaccaccctctcgtggtagaatcgtggaagaaccctaattgctggatttggcgtctcaaacgacgccgttt |
243 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
34944417 |
ccaaaattctggggattgtcggagtgatccaccaccctctc-----------gtggaagaaccctaattgctggatttggcgactcaaacggcgccgttt |
34944329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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