View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_low_8 (Length: 292)
Name: NF6946_low_8
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 26831753 - 26831471
Alignment:
| Q |
1 |
tttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831753 |
tttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgcc |
26831654 |
T |
|
| Q |
101 |
ttctttggcttcaacggtaaaatccctaatctaatctcatcgcatggctaaaacagtttcatccattttccttctaaattgtgattatagtcatagttat |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26831653 |
ttctttggcttcaacggtaaaacccctaatctaatctcatcgcatggctaaaacagtttcatccattttccttctgaattgtgattatagtcatagttat |
26831554 |
T |
|
| Q |
201 |
ggttacgtacactgcaagctttgatactacaataatacaaacaaatgtggctgatatgcggccacaattatagcgatgatgtc |
283 |
Q |
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|||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26831553 |
ggttacatacgctgcaagctttgatactacgataatacaaacaaatgtggctgatatgcggccacaattatagctgtgatgtc |
26831471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 26785113 - 26784994
Alignment:
| Q |
1 |
tttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgcc |
100 |
Q |
| |
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|||||| |||||| |||||||||| ||||| ||||||||| |||||||||| ||||||||||||| |||||||||||||| || ||||| |||| ||| |
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| T |
26785113 |
tttagtaaatgcgaatgaatgtttgatgacgaggatgcaaaagatgtcacttgattatcattttacggttgaacaagaagtggggtcttctacttatgcc |
26785014 |
T |
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| Q |
101 |
ttctttggcttcaacggtaa |
120 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
26785013 |
ttctttggcttcaatggtaa |
26784994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 26818000 - 26817885
Alignment:
| Q |
4 |
agtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttc |
103 |
Q |
| |
|
|||||||||| | |||||||| ||||| ||||||||| | ||||||||| |||||||||||| || ||||||||||| ||||||||| ||||||||||| |
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| T |
26818000 |
agtgaatgcgaacgaatgtttgatgacgaggatgcaacaaatgtcactcgattatcattttaaggtagaacaagaagtgggatcttccgcttacgccttc |
26817901 |
T |
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| Q |
104 |
tttggcttcaacggta |
119 |
Q |
| |
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||||||||||| |||| |
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| T |
26817900 |
tttggcttcaatggta |
26817885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 26791316 - 26791197
Alignment:
| Q |
1 |
tttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgcc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| | |||||||| |||| ||||||| || ||||||||||| || |||||| |||| ||| |
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| T |
26791316 |
tttagtgaatgcaaatgaatgtttaatgacgaggatgcaacaaatgtcacttgattaccattttaaggtggaacaagaagtagggtcttccacttatgcc |
26791217 |
T |
|
| Q |
101 |
ttctttggcttcaacggtaa |
120 |
Q |
| |
|
|||||||||||||| ||||| |
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| T |
26791216 |
ttctttggcttcaatggtaa |
26791197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 41546623 - 41546664
Alignment:
| Q |
8 |
aatgcggatgaatgtttaatgacaaggatgcaagagatgtca |
49 |
Q |
| |
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||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
41546623 |
aatgctgatgaatgcttaatgacaagaatgcaagagatgtca |
41546664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 41919472 - 41919589
Alignment:
| Q |
4 |
agtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttc |
103 |
Q |
| |
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||||||| ||||||||||| | ||||| || ||||||||||||||||| |||| |||||||| || ||||||||||| || |||||| |||| |||||| |
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| T |
41919472 |
agtgaattcggatgaatgtatgatgactagaatgcaagagatgtcactagattaccattttactgtggaacaagaagtggggtcttccacttatgccttc |
41919571 |
T |
|
| Q |
104 |
tttggcttcaacggtaaa |
121 |
Q |
| |
|
|||||||||||||||||| |
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| T |
41919572 |
tttggcttcaacggtaaa |
41919589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 20237408 - 20237292
Alignment:
| Q |
4 |
agtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttc |
103 |
Q |
| |
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||||||||| |||||||||| ||||||| |||||||||||||| | |||| ||||| |||||||| |||||||||||||| | || | || ||| |
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| T |
20237408 |
agtgaatgcaaatgaatgtttgttgacaagaatgcaagagatgtctttggattaccatttcacagttgagcaagaagttggatcagctactcatgctttc |
20237309 |
T |
|
| Q |
104 |
tttggcttcaacggtaa |
120 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
20237308 |
tttggcttcaatggtaa |
20237292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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