View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6946_low_9 (Length: 289)
Name: NF6946_low_9
Description: NF6946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6946_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 29145386 - 29145117
Alignment:
| Q |
1 |
cttagaaagcaataaatgcagaaaattaagattggaaaatcctaaacaagtgccaaaaaagaaaacgtatgaagcattgacactggacacgacattgcca |
100 |
Q |
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| T |
29145386 |
cttagaaagcaataaatgcagaaaattaagattggaaaatcctaaacaagtgccaaaaaa-aaaacgtatgaagcattgacactggacacgacattgcca |
29145288 |
T |
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| Q |
101 |
cttctcattgacaccagtaataatttgagagaatgtaaccacgagtgtcaaatgtgtccgacatgtgttggatatatactagacacaccttcaatttaaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29145287 |
cttctcattgacac-agtaataatttgagagaatgtaaccacgagtgtcaaatgtgtccgacatgtgttggata----ctagacacaccttcaatttaaa |
29145193 |
T |
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| Q |
201 |
gtgtcgatgctacgagaaaagaaaactaacctggcttgaggaactcgatttcgatgcagggttggcttcattttga |
276 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
29145192 |
gtgttgatgctacgagaaaagaaaactaacctggcttgaggagcccgatttcgatgcagggttggcttcattttga |
29145117 |
T |
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