View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6947_low_1 (Length: 641)
Name: NF6947_low_1
Description: NF6947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6947_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 573; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 20 - 634
Target Start/End: Complemental strand, 43311542 - 43310935
Alignment:
| Q |
20 |
gggtgtggagattgcagtggattataggatggagtacgatgttgggcgtgattatcttttagcttcagacaagatcgagaaaggaataaggagtgtgttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43311542 |
gggtgtggagattgcagtggattataggatggagtacgatgttgggcgtgattatcttttagcttcagacaagatcgagaaaggaataaggagtgtgttg |
43311443 |
T |
|
| Q |
120 |
gaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttagagggtggatcttcctacacttgcttaggtagtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43311442 |
gaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttagagggtggatcttcctacacttgcttaggtagtt |
43311343 |
T |
|
| Q |
220 |
tgattgattatattatgaatcatgtatgaaattatgttactgaccacatacaaaatggttggagggtattagtcattagtcaaattactacataaatcaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43311342 |
tgattgattatattatgaatcatgtatgaaattatgttactgaccacatacaaaatggttggagggtattagtca-------aattactacataaatcaa |
43311250 |
T |
|
| Q |
320 |
ctcaacttgatttcacttcgttgaaatgaggaaatgcgttttagaaagttttgtccaaaagtttacaattgtgttttgacatgtaactgatatagttctg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43311249 |
ctcaacttgatttcacttcgttgaaatgaggaaatgcgttttagaaagttttgtccaaaagtttacaattgtgttttgacaggtaactgatatagttctg |
43311150 |
T |
|
| Q |
420 |
cactttaactgaaatacactattcagtttagtaaagtcaaattcataaaaactatatgaatgtggatcaaaattacatggcagtcattcacatttttgct |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43311149 |
cactttaactgaaatacactattcagtttagtaaagtcaaattcataaaaactatatgaatgtggatcaaaattacatggcagtcattcacatttttgct |
43311050 |
T |
|
| Q |
520 |
attattgaactgatgaattaaaagtagattgcatctgattgtaattgtaacattttaatgtaatagaaaaataatactgttaaatagagttatatagttt |
619 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43311049 |
attattgaactgataaattaaaagtagattgcatctgattgtaattgtaacattttaatgtaatagaaaaataatactgttgaatagagttatatagttt |
43310950 |
T |
|
| Q |
620 |
tctcacacaggttct |
634 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
43310949 |
tctcacacagattct |
43310935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 39463499 - 39463354
Alignment:
| Q |
90 |
aagatcgagaaaggaataaggagtgtgttggaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttagagg |
189 |
Q |
| |
|
||||| |||| |||||||||||||||||| || | |||||||| |||||||||||||||||||||||||||||| | ||| |||||| |||||||||| |
|
|
| T |
39463499 |
aagattgagagaggaataaggagtgtgttagataaggatggagaagtaaggaagaaagtgaaagagatgagtgaaaaaagtaagaagactttgttagagg |
39463400 |
T |
|
| Q |
190 |
gtggatcttcctacacttgcttaggtagtttgattgattatattat |
235 |
Q |
| |
|
| |||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
39463399 |
gaggatcttcctacacttatttaggtcgtttgattgattatattat |
39463354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 101 - 253
Target Start/End: Original strand, 39476754 - 39476906
Alignment:
| Q |
101 |
aggaataaggagtgtgttggaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttagagggtggatcttcc |
200 |
Q |
| |
|
||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||| | ||| |||||| |||||||| ||||||||||| |
|
|
| T |
39476754 |
aggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatcttct |
39476853 |
T |
|
| Q |
201 |
tacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaatta |
253 |
Q |
| |
|
|||| || |||||| |||||||||||||||||||| || | ||||||||||| |
|
|
| T |
39476854 |
tacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaatta |
39476906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 90 - 249
Target Start/End: Original strand, 39473261 - 39473420
Alignment:
| Q |
90 |
aagatcgagaaaggaataaggagtgtgttggaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttagagg |
189 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| | ||| |||||| |||||||| | |
|
|
| T |
39473261 |
aagattgagagaggaataaggagtgtgttggataaggatggagatgtaaggaagaaagtgaaagagatgagtgaaaaaagtaagaagactttgttagaag |
39473360 |
T |
|
| Q |
190 |
gtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaa |
249 |
Q |
| |
|
|||||||||| ||| | | |||||| | ||| ||||||||||||||||||| ||||||| |
|
|
| T |
39473361 |
gtggatcttcttacgcatatttaggtcgattggttgattatattatgaatcaggtatgaa |
39473420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 39484428 - 39484659
Alignment:
| Q |
22 |
gtgtggagattgcagtggattataggatggagtacgatgttgggcgtgattatcttttagcttcagacaagatcgagaaaggaataaggagtgtgttgga |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || || | | | |||||| || | | |||||||| |||| || |||||||||||||||| | |
|
|
| T |
39484428 |
gtgtggagattgcattggattataggatggagtttagtggtgagtctaactatcttgtaagtgccgacaagattgagagagtaataaggagtgtgttgta |
39484527 |
T |
|
| Q |
122 |
aacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttagagggtggatcttcctacacttgcttaggtagtttg |
221 |
Q |
| |
|
| ||||||||||| | ||||||||||||| | |||||||| | |||||||||| |||||||||||||||||||||||||||| |||||| | || |
|
|
| T |
39484528 |
taaggatggagaggttaagaagaaagtgaaaaaaatgagtgagaagagtaggaagactttgttagagggtggatcttcctacacttatttaggtcatctg |
39484627 |
T |
|
| Q |
222 |
attgattatattatgaatcatgtatgaaatta |
253 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |
|
|
| T |
39484628 |
attgattatattatgaatcaggtatcaaatta |
39484659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 39487696 - 39487859
Alignment:
| Q |
90 |
aagatcgagaaaggaataaggagtgtgttggaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttagagg |
189 |
Q |
| |
|
||||| |||| ||||||||||| | ||||||| | |||||||| | ||||| ||||||| ||||||||||||| | ||| |||||| |||||||||| |
|
|
| T |
39487696 |
aagattgagagaggaataaggaatttgttggataaggatggagaattcaggaaaaaagtgatagagatgagtgaaaagagtaagaagactttgttagagg |
39487795 |
T |
|
| Q |
190 |
gtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaatta |
253 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
39487796 |
gtggatcttcctacacttatttaggtcatttgattgattatattatgaatcaggtatcaaatta |
39487859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 39455792 - 39456022
Alignment:
| Q |
23 |
tgtggagattgcagtggattataggatggagtacgatgttgggcgtgattatcttttagcttcagacaagatcgagaaaggaataaggagtgtgttggaa |
122 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||| | ||||| | | ||||||||| |||| |||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
39455792 |
tgtggagattgcgctagattatagggtggagtatagtagtgggcctaactatcttttaacttcggacaagattgagagaggaataaggagtgtattggat |
39455891 |
T |
|
| Q |
123 |
acagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttagagggtggatcttcctacacttgcttaggtagtttga |
222 |
Q |
| |
|
| ||||||||| | ||||| | ||||||||||||||||||| | | | |||||| ||||||||||| |||||||| | ||||| |||||| |||| | |
|
|
| T |
39455892 |
aaggatggagagtttaggaaaacagtgaaagagatgagtgaaaagagcaagaagactttgttagagggaggatcttcttccacttatttaggtcgtttaa |
39455991 |
T |
|
| Q |
223 |
ttgattatattatgaatcatgtatgaaatta |
253 |
Q |
| |
|
|||||||||||||||| || |||| |||||| |
|
|
| T |
39455992 |
ttgattatattatgaaccaggtatcaaatta |
39456022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 39457255 - 39457093
Alignment:
| Q |
72 |
tatcttttagcttcagacaagatcgagaaaggaataaggagtgtgttggaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgta |
171 |
Q |
| |
|
||||||||| || | |||||||| |||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
39457255 |
tatcttttaactgccgacaagattgagagaggaataaagagtgtgttggataaggatggagaggtaaggaagaaagtgaaagagatgagtgcagcaagta |
39457156 |
T |
|
| Q |
172 |
ggaagacattgttagagggtggatcttcctacacttgcttaggtagtttgattgattatatta |
234 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
39457155 |
agaagactctgttagatggaggatcttcctacacttatttaggtcgtttgatcgattatatta |
39457093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 87 - 253
Target Start/End: Original strand, 39452228 - 39452394
Alignment:
| Q |
87 |
gacaagatcgagaaaggaataaggagtgtgttggaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttag |
186 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | ||||||||| | ||||| ||| ||||||||||||||||| | ||| |||||| |||||| |
|
|
| T |
39452228 |
gacaagattgagaaaggaataaggagtgtgttggataaggatggagagttcaggaaaaaaatgaaagagatgagtgaaaagagtaagaagactctgttag |
39452327 |
T |
|
| Q |
187 |
agggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaatta |
253 |
Q |
| |
|
| || |||||||||| || || ||| || |||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
39452328 |
aaggaggatcttcctccatttatttaagtcgtttaattgattatattatgaaccaggtatgaaatta |
39452394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 39461481 - 39461635
Alignment:
| Q |
87 |
gacaagatcgagaaaggaataaggagtgtgttggaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttag |
186 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||| | ||||||| || ||||||| |
|
|
| T |
39461481 |
gacaagattgagagaggaataaggaatgtgttggaaaaggatggagaggtcagaaagaaagtgaaagagatgagtgaaaagagtaggaaaactttgttag |
39461580 |
T |
|
| Q |
187 |
agggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatca |
241 |
Q |
| |
|
||||||||||||| |||| | |||||| |||| || |||| |||| ||||||| |
|
|
| T |
39461581 |
agggtggatcttcttacagtcatttaggtcgtttaatagattttattgtgaatca |
39461635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 39452936 - 39452846
Alignment:
| Q |
74 |
tcttttagcttcagacaagatcgagaaaggaataaggagtgtgttggaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaa |
164 |
Q |
| |
|
||||||| || | ||||| || |||| |||||||| |||||||||| | | |||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
39452936 |
tcttttaactgcggacaaaattgagagaggaataaagagtgtgttgtataaggatggagaggtaagaaagaaagtgcaagagataagtgaa |
39452846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University