View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6947_low_4 (Length: 220)
Name: NF6947_low_4
Description: NF6947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6947_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 45065344 - 45065543
Alignment:
| Q |
18 |
aagagcgtttgaaagagcttgaagaagacatcaagaagagagatgcaggatcattgagcagcataacaagatctcatgtcctaattgacaaagacactac |
117 |
Q |
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| T |
45065344 |
aagagcgtttgaaagagcttgaagaaaacattaagaagaaagatgcaggatcaatgagcaacataacaagatcccatgtactaattgacaaagacactac |
45065443 |
T |
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| Q |
118 |
aatcggtgaaatgaacactgaagaatgttatggccgaaatgaatcacttctagaggttgatgctagggttcttgggaaggaagtgtcaatcaagatttat |
217 |
Q |
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| T |
45065444 |
gataggtgaaatgaacactgaagaatgttatggccgaaataaatcacttctaaaggttgatgctagagttcttgggaaggaagtgtcaattaagatttat |
45065543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 45039432 - 45039634
Alignment:
| Q |
18 |
aagagcgtttgaaagagcttgaagaagacatcaagaagagagatgcaggatcattgagcagcataacaagatctcatgtcctaattgacaaagacactac |
117 |
Q |
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| T |
45039432 |
aagaacgtttgaaagagctagaagaagacattaagaagaaagatgcaggatcattgagcaccataacaagatctcgtgttttaattgacaaagacattgc |
45039531 |
T |
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| Q |
118 |
aatcggtgaaatgaacactgaagaatgttatggccgaaatgaatcacttctagaggttgatgctagggttcttgggaaggaagtgtcaatcaagatttat |
217 |
Q |
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| T |
45039532 |
aatcggtgaaatgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttat |
45039631 |
T |
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| Q |
218 |
tgt |
220 |
Q |
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| T |
45039632 |
tgt |
45039634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 45083158 - 45082962
Alignment:
| Q |
18 |
aagagcgtttgaaagagcttgaagaagacatcaagaagagagatgcaggatcattgagcagcataacaagatctcatgtcctaattgacaaagacactac |
117 |
Q |
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| T |
45083158 |
aagaacgtgtgaaagagctagaagaagacatcaagaagaaaggtgcgggatcattgatcaccataacaagatctcatctccttgatgacaatgacactgc |
45083059 |
T |
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| Q |
118 |
aatcggtgaaatgaacactgaagaatgttatggccgaaatgaatcacttctagaggttgatgctagggttcttgggaaggaagtgtcaatcaagatt |
214 |
Q |
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| T |
45083058 |
aatgggtgaaatgaacactaaagaatgttatcggcacaatgaaacatttccagagcttgaagtgagggttctagggaaggaagtgttaatcaagatt |
45082962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 29377207 - 29377387
Alignment:
| Q |
40 |
agaagacatcaagaagagagatgcaggatcattgagcagcataacaagatctcatgtcctaattgacaaagacactacaatcggtgaaatgaacactgaa |
139 |
Q |
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|||||| ||||| |||| ||| |||| ||| |||||| |||||||||||| ||| || ||||||||||||||||| |||| | ||||||||| |||||| |
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| T |
29377207 |
agaagatatcaaaaagaaagacacagggtcagtgagcaccataacaagatcccatatcttaattgacaaagacactgcaatagatgaaatgaaaactgaa |
29377306 |
T |
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| Q |
140 |
gaatgttatggccgaaatgaatcacttctagaggttgatgctagggttcttgggaaggaagtgtcaatcaagatttattgt |
220 |
Q |
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| T |
29377307 |
gaatgttacgggcgaaatgaatcacttgtagaggttgaagctagggttctagggaatgaagtgttaatcaagattcattgt |
29377387 |
T |
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